ENSDARG00000089892


Danio rerio

Features
Gene ID: ENSDARG00000089892
  
Biological name :cd44b
  
Synonyms : cd44b / CD44 molecule (Indian blood group) b
  
Possible biological names infered from orthology : CD44 / CD44 molecule (Indian blood group) / P16070
  
Species: Danio rerio
  
Chr. number: 25
Strand: -1
Band:
Gene start: 37408792
Gene end: 37422859
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000127635
NCBI entrez gene - 100330801     See in Manteia.
swissprot - X1WBP3
ZFIN ID - ZDB-GENE-110429-2
Ensembl - ENSDARG00000089892
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 CD44ENSGALG00000039080Gallus gallus
 CD44ENSG00000026508Homo sapiens
 Cd44ENSMUSG00000005087Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
cd44a / CD44 molecule (Indian blood group) a / CD44* / P16070* / CD44 molecule (Indian blood group)*ENSDARG0000008786315
lyve1b / lymphatic vessel endothelial hyaluronic receptor 1b / LYVE1* / Q8BHC0* / Q9Y5Y7* / lymphatic vessel endothelial hyaluronan receptor 1* / Lymphatic vessel endothelial hyaluronic aci...ENSDARG0000006248314
lyve1a / lymphatic vessel endothelial hyaluronic receptor 1aENSDARG0000007583312


Protein motifs (from Interpro)
Interpro ID Name
 IPR000538  Link domain
 IPR001231  CD44 antigen
 IPR016186  C-type lectin-like/link domain superfamily
 IPR016187  C-type lectin fold


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007155 cell adhesion IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0005540 hyaluronic acid binding IEA


Pathways (from Reactome)
Pathway description
Degradation of the extracellular matrix
Cell surface interactions at the vascular wall
Hyaluronan uptake and degradation
Neutrophil degranulation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000052859 chp1 / calcineurin-like EF-hand protein 1 / P61022* / Q99653* / Calcineurin B homologous protein 1 *  / reaction / complex
 ENSDARG00000089892 cd44b / CD44 molecule (Indian blood group) b / CD44* / P16070* / CD44 molecule (Indian blood group)*  / complex / reaction
 ENSDARG00000009123 sele / selectin E / P16581* / selectin, endothelial cell*  / complex / reaction
 ENSDARG00000105023 selplg / selectin P ligand / Q14242*  / complex / reaction
 ENSDARG00000059931 hyal2a / hyaluronoglucosaminidase 2a / HYAL2* / Q12891* / O35632* / Hyaluronidase-2 * / hyaluronoglucosaminidase 2*  / reaction / complex
 ENSDARG00000062997 hyal2b / hyaluronoglucosaminidase 2b / HYAL2* / Q12891* / O35632* / Hyaluronidase-2 * / hyaluronoglucosaminidase 2*  / reaction / complex
 ENSDARG00000087863 cd44a / CD44 molecule (Indian blood group) a / CD44* / P16070* / CD44 molecule (Indian blood group)*  / complex / reaction






 

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