ENSDARG00000100506


Danio rerio

Features
Gene ID: ENSDARG00000100506
  
Biological name :crb1
  
Synonyms : crb1 / crumbs family member 1, photoreceptor morphogenesis associated
  
Possible biological names infered from orthology : 1 / crumbs 1, cell polarity complex component / P82279 / Q8VHS2
  
Species: Danio rerio
  
Chr. number: 22
Strand: -1
Band:
Gene start: 23493170
Gene end: 23545828
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000136338
Ensembl peptide - ENSDARP00000139259
NCBI entrez gene - 560942     See in Manteia.
RefSeq - NM_001044943
RefSeq Peptide - NP_001038408
swissprot - Q1L927
ZFIN ID - ZDB-GENE-050208-382
Ensembl - ENSDARG00000100506
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 CRB1ENSGALG00000002287Gallus gallus
 CRB1ENSG00000134376Homo sapiens
 1 ENSMUSG00000063681Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
crb2a / crumbs family member 2a / 2 * / CRB2* / Q5IJ48* / Q80YA8* / crumbs 2, cell polarity complex component*ENSDARG0000006010636
crb2b / crumbs family member 2b / CRB2* / Q5IJ48* / crumbs 2, cell polarity complex component*ENSDARG0000006008124
slit1a / slit homolog 1a (Drosophila) / SLIT1* / Q80TR4* / O75093* / slit guidance ligand 1* / Slit homolog 1 protein *ENSDARG0000004495417
slit1b / slit homolog 1b (Drosophila) / SLIT1* / Q80TR4* / O75093* / slit guidance ligand 1* / Slit homolog 1 protein *ENSDARG0000009944617
slit2 / slit homolog 2 (Drosophila) / O94813* / Q9R1B9* / slit guidance ligand 2*ENSDARG0000000424616
slit3 / slit homolog 3 (Drosophila) / Q9WVB4* / O75094* / slit guidance ligand 3* / Slit homolog 3 protein *ENSDARG0000003426816
dner / delta/notch-like EGF repeat containing / Q8NFT8*ENSDARG0000006103112
CABZ01102109.1 / DLK1* / P80370* / delta like non-canonical Notch ligand 1*ENSDARG000001142266
dlk2 / delta-like 2 homolog (Drosophila) / 2 * / Q6UY11* / Q8K1E3* / delta like non-canonical Notch ligand 2*ENSDARG000000762476
CR456624.1 / DLL3* / O88516* / Q9NYJ7* / Delta-like protein 3 * / delta like canonical Notch ligand 3*ENSDARG000000795195


Protein motifs (from Interpro)
Interpro ID Name
 IPR000152  EGF-type aspartate/asparagine hydroxylation site
 IPR000742  EGF-like domain
 IPR001791  Laminin G domain
 IPR001881  EGF-like calcium-binding domain
 IPR009030  Growth factor receptor cysteine-rich domain superfamily
 IPR013032  EGF-like, conserved site
 IPR013320  Concanavalin A-like lectin/glucanase domain superfamily
 IPR018097  EGF-like calcium-binding, conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0045197 establishment or maintenance of epithelial cell apical/basal polarity IGI
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0005509 calcium ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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