ENSDARG00000105490


Danio rerio

Features
Gene ID: ENSDARG00000105490
  
Biological name :rph3ab
  
Synonyms : rabphilin 3A homolog (mouse), b / rph3ab
  
Possible biological names infered from orthology : P47708 / Q9Y2J0 / rabphilin 3A / RPH3A
  
Species: Danio rerio
  
Chr. number: 7
Strand: -1
Band:
Gene start: 72402279
Gene end: 72435159
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000146230
Ensembl peptide - ENSDARP00000152035
Ensembl peptide - ENSDARP00000142572
Ensembl peptide - ENSDARP00000145512
Ensembl peptide - ENSDARP00000145707
NCBI entrez gene - 563377     See in Manteia.
swissprot - A0A140LH42
ZFIN ID - ZDB-GENE-090706-3
Ensembl - ENSDARG00000105490
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 RPH3AENSGALG00000004840Gallus gallus
 RPH3AENSG00000089169Homo sapiens
 Rph3aENSMUSG00000029608Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
doc2b / double C2-like domains, beta / P70169* / double C2 domain beta* / Double C2-like domain-containing protein beta *ENSDARG0000008829344
doc2d / double C2-like domains, delta / Doc2g*ENSDARG0000007996236
si:dkey-93n13.3 / DOC2A* / Q14183* / Q7TNF0* / double C2 domain alpha* / Double C2-like domain-containing protein alpha *ENSDARG0000007873634
sytl4 / synaptotagmin-like 4 / Q96C24* / Q9R0Q1*ENSDARG0000010243322
sytl5 / synaptotagmin-like 5 / Q80T23* / Q8TDW5*ENSDARG0000006213520
sytl2b / synaptotagmin-like 2b / SYTL2* / Q9HCH5* / Q99N50* / synaptotagmin like 2* / Synaptotagmin-like protein 2 *ENSDARG0000007543619
si:ch211-266g18.6ENSDARG0000000338117
rph3aa / rabphilin 3A homolog (mouse), a / RPH3A* / Q9Y2J0* / rabphilin 3A*ENSDARG0000006343617
sytl3 / synaptotagmin-like 3 / Q4VX76* / Q99N48* / Synaptotagmin-like protein 3 *ENSDARG0000004346816
sytl1 / synaptotagmin-like 1 / Q8IYJ3*ENSDARG0000007009415
sytl2a / synaptotagmin-like 2a / SYTL2* / Q9HCH5* / synaptotagmin like 2*ENSDARG0000006195613


Protein motifs (from Interpro)
Interpro ID Name
 IPR000008  C2 domain
 IPR001565  Synaptotagmin
 IPR010911  Rab-binding domain
 IPR011011  Zinc finger, FYVE/PHD-type
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR017455  Zinc finger, FYVE-related
 IPR028698  Rabphilin-3A


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006886 intracellular protein transport IEA
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0016020 membrane IEA
 molecular_functionGO:0017137 Rab GTPase binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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