ENSMUSG00000029608


Mus musculus

Features
Gene ID: ENSMUSG00000029608
  
Biological name :Rph3a
  
Synonyms : P47708 / Rabphilin-3A / Rph3a
  
Possible biological names infered from orthology : Q9Y2J0
  
Species: Mus musculus
  
Chr. number: 5
Strand: -1
Band: F
Gene start: 120940499
Gene end: 121010092
  
Corresponding Affymetrix probe sets: 10533261 (MoGene1.0st)   1434635_at (Mouse Genome 430 2.0 Array)   1449961_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000078198
Ensembl peptide - ENSMUSP00000143917
Ensembl peptide - ENSMUSP00000144291
Ensembl peptide - ENSMUSP00000144437
NCBI entrez gene - 19894     See in Manteia.
MGI - MGI:102788
RefSeq - XM_011248188
RefSeq - NM_001302344
RefSeq - NM_001302345
RefSeq - NM_011286
RefSeq - XM_011248185
RefSeq - XM_011248186
RefSeq - XM_011248187
RefSeq Peptide - NP_001289273
RefSeq Peptide - NP_001289274
RefSeq Peptide - NP_035416
swissprot - P47708
swissprot - A0A0J9YV12
Ensembl - ENSMUSG00000029608
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 rph3aaENSDARG00000063436Danio rerio
 rph3abENSDARG00000105490Danio rerio
 RPH3AENSGALG00000004840Gallus gallus
 RPH3AENSG00000089169Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Doc2b / P70169 / Double C2-like domain-containing protein beta / double C2 domain beta*ENSMUSG0000002084837
Doc2a / Q7TNF0 / Double C2-like domain-containing protein alpha / Q14183* / double C2 domain alpha*ENSMUSG0000005230133
Doc2gENSMUSG0000002487128
Sytl4 / Q9R0Q1 / synaptotagmin-like 4 / Q96C24*ENSMUSG0000003125521
Sytl5 / Q80T23 / synaptotagmin-like 5 / Q8TDW5*ENSMUSG0000005445320
Sytl2 / Q99N50 / Synaptotagmin-like protein 2 / Q9HCH5* / synaptotagmin like 2*ENSMUSG0000003061618
Sytl1 / synaptotagmin like 1 / Q8IYJ3*ENSMUSG0000002886017
Sytl3 / Q99N48 / Synaptotagmin-like protein 3 / Q4VX76* / synaptotagmin like 3*ENSMUSG0000004183116


Protein motifs (from Interpro)
Interpro ID Name
 IPR000008  C2 domain
 IPR001565  Synaptotagmin
 IPR010911  Rab-binding domain
 IPR011011  Zinc finger, FYVE/PHD-type
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR017455  Zinc finger, FYVE-related
 IPR028698  Rabphilin-3A
 IPR035892  C2 domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006886 intracellular protein transport IEA
 biological_processGO:0006906 vesicle fusion IBA
 biological_processGO:0015031 protein transport IEA
 biological_processGO:0017158 regulation of calcium ion-dependent exocytosis IBA
 biological_processGO:0048791 calcium ion-regulated exocytosis of neurotransmitter IBA
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005794 Golgi apparatus ISS
 cellular_componentGO:0005829 cytosol ISS
 cellular_componentGO:0005886 plasma membrane IBA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0019898 extrinsic component of membrane ISS
 cellular_componentGO:0030054 cell junction IEA
 cellular_componentGO:0030141 secretory granule ISS
 cellular_componentGO:0030672 synaptic vesicle membrane ISS
 cellular_componentGO:0032991 protein-containing complex ISS
 cellular_componentGO:0043005 neuron projection ISS
 cellular_componentGO:0045202 synapse ISS
 cellular_componentGO:0070382 exocytic vesicle IBA
 molecular_functionGO:0005509 calcium ion binding ISS
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0005544 calcium-dependent phospholipid binding IBA
 molecular_functionGO:0005546 phosphatidylinositol-4,5-bisphosphate binding ISS
 molecular_functionGO:0008270 zinc ion binding ISS
 molecular_functionGO:0008289 lipid binding IEA
 molecular_functionGO:0008430 selenium binding ISS
 molecular_functionGO:0017137 Rab GTPase binding IEA
 molecular_functionGO:0019905 syntaxin binding IBA
 molecular_functionGO:0030276 clathrin binding IBA
 molecular_functionGO:0042301 phosphate ion binding ISS
 molecular_functionGO:0044877 protein-containing complex binding ISS
 molecular_functionGO:0046872 metal ion binding IEA
 molecular_functionGO:0070679 inositol 1,4,5 trisphosphate binding ISS


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 MP:0002169 no phenotype detected "normal, viable and fertile appearance and behavior; indistinguishable from controls" [csmith:Cynthia L. Smith , Mouse Genome Informatics Curator]
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Allelic Composition: RelbTg(H2-K1/GH1)106Bri/RelbTg(H2-K1/GH1)106Bri
Genetic Background: C57BL/6-RelbTg(H2-K1/GH1)106Bri

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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