Manteia

ENSDARG00000115868

Danio rerio

Features

Gene ID:	ENSDARG00000115868

Biological name :	sp5l

Synonyms :	sp5l / Sp5 transcription factor-like

Possible biological names infered from orthology :	Q6BEB4 / Q9JHX2 / SP5 / Sp5 transcription factor / Transcription factor Sp5

Species:	Danio rerio

Chr. number:	23
Strand:	-1
Band:
Gene start:	28023091
Gene end:	28025943

Corresponding Affymetrix probe sets:	Dr.4007.1.S1_at (Zebrafish Array) NM_194371_at (Zebrafish Genome Array with custom cdf files)

Cross references:	Ensembl peptide - ENSDARP00000155656 NCBI entrez gene - 324261 See in Manteia. RefSeq - NM_194371 RefSeq Peptide - NP_919352 swissprot - Q7T2W1 ZFIN ID - ZDB-GENE-030131-2981 Ensembl - ENSDARG00000115868

See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed

Ortholog prediction (from Ensembl)

Ortholog name	ID	Species
SP5	ENSGALG00000034094	Gallus gallus
SP5	ENSG00000204335	Homo sapiens
Sp5	ENSMUSG00000075304	Mus musculus

Paralog prediction (from Ensembl)

Paralog name	ID	Similarity(%)
sp5a / Sp5 transcription factor a / SP5* / Q9JHX2* / Q6BEB4* / Sp5 transcription factor* / Transcription factor Sp5 *	ENSDARG00000076571	52
sp9 / Q6NW96 / sp9 transcription factor / Q64HY3* / P0CG40* / Transcription factor Sp9 *	ENSDARG00000099374	35
sp8a / sp8 transcription factor a / SP8* / Q8IXZ3* / Q8BMJ8* / Sp8 transcription factor* / Transcription factor Sp8 *	ENSDARG00000011870	34
sp8b / Q6P0J3 / sp8 transcription factor b	ENSDARG00000056666	33
sp4 / sp4 transcription factor / Q02446*	ENSDARG00000005186	32
FO704755.1	ENSDARG00000005846	32
sp1 / sp1 transcription factor / O89090* / P08047* / Transcription factor Sp1 *	ENSDARG00000088347	30
sp3a / sp3a transcription factor / SP3* / Q02447* / O70494* / Sp3 transcription factor* / Transcription factor Sp3 *	ENSDARG00000001549	29
sp7 / Sp7 transcription factor / Q8TDD2* / Q8VI67* / Mus musculus Sp7 transcription factor 7 (Sp7), transcript variant 2, mRNA.*	ENSDARG00000019516	28
sp3b / Sp3b transcription factor / SP3* / Q02447* / O70494* / Sp3 transcription factor* / Transcription factor Sp3 *	ENSDARG00000007812	28
sp2 / sp2 transcription factor / Q02086*	ENSDARG00000076763	26
sp6 / Sp6 transcription factor / Q3SY56* / Q9ESX2* / trans-acting transcription factor 6*	ENSDARG00000099880	24
klf11b / Kruppel-like factor 11b / KLF11* / Q8K1S5* / O14901* / Kruppel like factor 11* / Krueppel-like factor 11 *	ENSDARG00000013794	21
klf11a / Kruppel-like factor 11a / KLF11* / Q8K1S5* / O14901* / Kruppel like factor 11* / Krueppel-like factor 11 *	ENSDARG00000030844	20
zgc:153115	ENSDARG00000069342	18
klf13 / Kruppel-like factor 13 / Q9JJZ6* / Q9Y2Y9* / Krueppel-like factor 13 *	ENSDARG00000061368	18
klf9 / Kruppel-like factor 9 / Q13886*	ENSDARG00000068194	16

Protein motifs (from Interpro)

Interpro ID	Name
IPR013087	Zinc finger C2H2-type

Gene Ontology (GO)

Type	GO ID	Term	Ev.Code
biological_process	GO:0001707	mesoderm formation	IMP
biological_process	GO:0006355	regulation of transcription, DNA-templated	IMP
biological_process	GO:0006357	regulation of transcription by RNA polymerase II	IBA
biological_process	GO:0007498	mesoderm development	IGI
biological_process	GO:0009952	anterior/posterior pattern specification	IMP
biological_process	GO:0016055	Wnt signaling pathway	IGI
biological_process	GO:0030902	hindbrain development	IMP
biological_process	GO:0030903	notochord development	IGI
biological_process	GO:0036342	post-anal tail morphogenesis	IGI
biological_process	GO:0048332	mesoderm morphogenesis	IGI
cellular_component	GO:0005634	nucleus	IBA
molecular_function	GO:0000981	RNA polymerase II transcription factor activity, sequence-specific DNA binding	IBA
molecular_function	GO:0003676	nucleic acid binding	IEA

Pathways (from Reactome)

Pathway description

No match

Phenotype (from MGI, Zfin or HPO)

ID	Phenotype	Definition	Genetic BG
ZFA:0000135	notochord	notochord truncated , abnormal	Show
ZFA:0000155	somite	somite decreased amount , abnormal	Show
ZFA:0001117	post-vent region	post-vent region decreased length , abnormal	Show

Interacting proteins (from Reactome)

Interactor ID

Name

Interaction type

No match

0 s.

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		© Olivier Tassy / Olivier Pourquie 2007-2024 contact: otassy@igbmc.fr