ENSDARG00000001549


Danio rerio

Features
Gene ID: ENSDARG00000001549
  
Biological name :sp3a
  
Synonyms : sp3a / sp3a transcription factor
  
Possible biological names infered from orthology : O70494 / Q02447 / SP3 / Sp3 transcription factor / Transcription factor Sp3
  
Species: Danio rerio
  
Chr. number: 9
Strand: 1
Band:
Gene start: 2762270
Gene end: 2777286
  
Corresponding Affymetrix probe sets: Dr.15876.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000001137
Ensembl peptide - ENSDARP00000143885
Ensembl peptide - ENSDARP00000110852
NCBI entrez gene - 558652     See in Manteia.
RefSeq - NM_001089498
RefSeq Peptide - NP_001082967
swissprot - A0A286YA94
swissprot - B0R082
swissprot - F1R3M8
swissprot - A4QP61
ZFIN ID - ZDB-GENE-070410-111
Ensembl - ENSDARG00000001549
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SP3ENSGALG00000031796Gallus gallus
 SP3ENSG00000172845Homo sapiens
 Sp3ENSMUSG00000027109Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
sp3b / Sp3b transcription factor / SP3* / Q02447* / O70494* / Sp3 transcription factor* / Transcription factor Sp3 *ENSDARG0000000781255
sp4 / sp4 transcription factor / Q02446*ENSDARG0000000518632
sp1 / sp1 transcription factor / O89090* / P08047* / Transcription factor Sp1 *ENSDARG0000008834728
sp2 / sp2 transcription factor / Q02086*ENSDARG0000007676322
sp9 / Q6NW96 / sp9 transcription factor / Q64HY3* / P0CG40* / Transcription factor Sp9 *ENSDARG0000009937419
sp5a / Sp5 transcription factor a / SP5* / Q9JHX2* / Q6BEB4* / Sp5 transcription factor* / Transcription factor Sp5 *ENSDARG0000007657118
sp7 / Sp7 transcription factor / Q8TDD2* / Q8VI67* / Mus musculus Sp7 transcription factor 7 (Sp7), transcript variant 2, mRNA.*ENSDARG0000001951618
sp8b / Q6P0J3 / sp8 transcription factor bENSDARG0000005666618
sp8a / sp8 transcription factor a / SP8* / Q8IXZ3* / Q8BMJ8* / Sp8 transcription factor* / Transcription factor Sp8 *ENSDARG0000001187017
FO704755.1ENSDARG0000000584616
sp5l / Sp5 transcription factor-like / SP5* / Q6BEB4* / Sp5 transcription factor*ENSDARG0000011586815
klf11b / Kruppel-like factor 11b / KLF11* / Q8K1S5* / O14901* / Kruppel like factor 11* / Krueppel-like factor 11 *ENSDARG0000001379413
klf11a / Kruppel-like factor 11a / KLF11* / Q8K1S5* / O14901* / Kruppel like factor 11* / Krueppel-like factor 11 *ENSDARG0000003084413
sp6 / Sp6 transcription factor / Q3SY56* / Q9ESX2* / trans-acting transcription factor 6*ENSDARG0000009988011
klf13 / Kruppel-like factor 13 / Q9JJZ6* / Q9Y2Y9* / Krueppel-like factor 13 *ENSDARG0000006136811
zgc:153115ENSDARG0000006934210
klf9 / Kruppel-like factor 9 / Q13886*ENSDARG000000681949


Protein motifs (from Interpro)
Interpro ID Name
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR013087  Zinc finger C2H2-type


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006357 regulation of transcription by RNA polymerase II IBA
 cellular_componentGO:0005634 nucleus IBA
 molecular_functionGO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding IBA
 molecular_functionGO:0000987 proximal promoter sequence-specific DNA binding IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA


Pathways (from Reactome)
Pathway description
SUMOylation of transcription factors


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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