ENSG00000017260


Homo sapiens

Features
Gene ID: ENSG00000017260
  
Biological name :ATP2C1
  
Synonyms : ATP2C1 / ATPase secretory pathway Ca2+ transporting 1 / P98194
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 3
Strand: 1
Band: q22.1
Gene start: 130850595
Gene end: 131016712
  
Corresponding Affymetrix probe sets: 209934_s_at (Human Genome U133 Plus 2.0 Array)   209935_at (Human Genome U133 Plus 2.0 Array)   211137_s_at (Human Genome U133 Plus 2.0 Array)   212255_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000425320
Ensembl peptide - ENSP00000425228
Ensembl peptide - ENSP00000426849
Ensembl peptide - ENSP00000432956
Ensembl peptide - ENSP00000427625
Ensembl peptide - ENSP00000427461
Ensembl peptide - ENSP00000427087
Ensembl peptide - ENSP00000329664
Ensembl peptide - ENSP00000352665
Ensembl peptide - ENSP00000395809
Ensembl peptide - ENSP00000402677
Ensembl peptide - ENSP00000421261
Ensembl peptide - ENSP00000421326
Ensembl peptide - ENSP00000422489
Ensembl peptide - ENSP00000422872
Ensembl peptide - ENSP00000422890
Ensembl peptide - ENSP00000423330
Ensembl peptide - ENSP00000423774
Ensembl peptide - ENSP00000424783
Ensembl peptide - ENSP00000424930
NCBI entrez gene - 27032     See in Manteia.
OMIM - 604384
RefSeq - NM_001199182
RefSeq - NM_001001485
RefSeq - NM_001001486
RefSeq - NM_001001487
RefSeq - NM_001199179
RefSeq - NM_001199180
RefSeq - NM_001199181
RefSeq - NM_001199183
RefSeq - NM_001199184
RefSeq - NM_001199185
RefSeq - NM_014382
RefSeq - XM_005247354
RefSeq - XM_005247355
RefSeq - XM_005247356
RefSeq - XM_005247358
RefSeq - XM_011512686
RefSeq - XM_017006164
RefSeq Peptide - NP_001186114
RefSeq Peptide - NP_055197
RefSeq Peptide - NP_001001485
RefSeq Peptide - NP_001001486
RefSeq Peptide - NP_001001487
RefSeq Peptide - NP_001186108
RefSeq Peptide - NP_001186109
RefSeq Peptide - NP_001186110
RefSeq Peptide - NP_001186111
RefSeq Peptide - NP_001186112
RefSeq Peptide - NP_001186113
swissprot - H0Y9V7
swissprot - P98194
swissprot - H0YAH2
swissprot - B4E2Q0
swissprot - D6RHV9
swissprot - D6RGE9
swissprot - D6REJ1
swissprot - D6R9U9
swissprot - H0Y8X9
swissprot - H0Y9S7
Ensembl - ENSG00000017260
  
Related genetic diseases (OMIM): 169600 - Hailey-Hailey disease, 169600
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 atp2c1ENSDARG00000060197Danio rerio
 ATP2C1ENSGALG00000034340Gallus gallus
 Atp2c1ENSMUSG00000032570Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
ATP2C2 / O75185 / ATPase secretory pathway Ca2+ transporting 2ENSG0000006427062
ATP2A3 / Q93084 / ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 3ENSG0000007437034
ATP2A2 / P16615 / ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 2ENSG0000017443734
ATP2A1 / O14983 / ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1ENSG0000019629633
ATP1A4 / Q13733 / ATPase Na+/K+ transporting subunit alpha 4ENSG0000013268128
ATP4A / P20648 / ATPase H+/K+ transporting alpha subunitENSG0000010567528
ATP1A3 / P13637 / ATPase Na+/K+ transporting subunit alpha 3ENSG0000010540928
ATP1A1 / P05023 / ATPase Na+/K+ transporting subunit alpha 1ENSG0000016339928
AC010616.2ENSG0000028550528
ATP1A2 / P50993 / ATPase Na+/K+ transporting subunit alpha 2ENSG0000001862528
ATP12A / P54707 / ATPase H+/K+ transporting non-gastric alpha2 subunitENSG0000007567326


Protein motifs (from Interpro)
Interpro ID Name
 IPR001757  P-type ATPase
 IPR004014  Cation-transporting P-type ATPase, N-terminal
 IPR006068  Cation-transporting P-type ATPase, C-terminal
 IPR006413  P-type ATPase, subfamily IIA, PMR1-type
 IPR008250  P-type ATPase, A domain superfamily
 IPR018303  P-type ATPase, phosphorylation site
 IPR023214  HAD superfamily
 IPR023298  P-type ATPase, transmembrane domain superfamily
 IPR023299  P-type ATPase, cytoplasmic domain N
 IPR030336  Calcium-transporting ATPase type 2C member 1
 IPR036412  HAD-like superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006811 ion transport IEA
 biological_processGO:0006816 calcium ion transport IMP
 biological_processGO:0006874 cellular calcium ion homeostasis IMP
 biological_processGO:0007165 signal transduction IEA
 biological_processGO:0008544 epidermis development IMP
 biological_processGO:0016339 calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules IMP
 biological_processGO:0031532 actin cytoskeleton reorganization IMP
 biological_processGO:0032468 Golgi calcium ion homeostasis IMP
 biological_processGO:0032472 Golgi calcium ion transport IMP
 biological_processGO:0034220 ion transmembrane transport TAS
 biological_processGO:0043123 positive regulation of I-kappaB kinase/NF-kappaB signaling HMP
 biological_processGO:0070588 calcium ion transmembrane transport IEA
 biological_processGO:0099132 ATP hydrolysis coupled cation transmembrane transport IEA
 cellular_componentGO:0000139 Golgi membrane TAS
 cellular_componentGO:0005794 Golgi apparatus IEA
 cellular_componentGO:0005802 trans-Golgi network IDA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane NAS
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0004871 obsolete signal transducer activity HMP
 molecular_functionGO:0005388 calcium-transporting ATPase activity IMP
 molecular_functionGO:0005524 ATP binding IEA
 molecular_functionGO:0016787 hydrolase activity IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
Ion transport by P-type ATPases


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000962 Hyperkeratosis "Hyperkeratosis is thickening of the outer layer of the skin, the stratum corneum, which is composed of large, polyhedral, plate-like envelopes filled with keratin which are the dead cells that have migrated up from the stratum granulosum." [HPO:curators]
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 HP:0010783 Erythema "Redness of the skin, caused by hyperemia of the capillaries in the lower layers of the skin." [HPO:probinson]
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 HP:0100792 Acantolysis "The loss of intercellular connections, such as desmosomes, resulting in loss of cohesion between keratinocytes." [HPO:sdoelken]
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 HP:0200037 skin vesicle "A circumscribed, fluid-containing, epidermal elevation generally considered less than 10mm in diameter at the widest point." [HPO:SKOEHLER]
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 HP:0200041 skin erosion "A discontinuity of the skin exhibiting incomplete loss of the epidermis, a lesion that is moist, circumscribed, and usually depressed." [HPO:SKOEHLER]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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