ENSG00000062038


Homo sapiens

Features
Gene ID: ENSG00000062038
  
Biological name :CDH3
  
Synonyms : cadherin 3 / CDH3 / P22223
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 16
Strand: 1
Band: q22.1
Gene start: 68636189
Gene end: 68722616
  
Corresponding Affymetrix probe sets: 203256_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000464058
Ensembl peptide - ENSP00000463415
Ensembl peptide - ENSP00000464021
Ensembl peptide - ENSP00000264012
Ensembl peptide - ENSP00000398485
Ensembl peptide - ENSP00000462111
Ensembl peptide - ENSP00000463267
Ensembl peptide - ENSP00000463364
NCBI entrez gene - 1001     See in Manteia.
OMIM - 114021
RefSeq - XM_011522800
RefSeq - NM_001317195
RefSeq - NM_001317196
RefSeq - NM_001793
RefSeq Peptide - NP_001784
RefSeq Peptide - NP_001304124
RefSeq Peptide - NP_001304125
swissprot - J3KRQ1
swissprot - J3QKW6
swissprot - J3QL41
swissprot - J3QR34
swissprot - J3QL75
swissprot - J3QR60
swissprot - P22223
Ensembl - ENSG00000062038
  
Related genetic diseases (OMIM): 225280 - Ectodermal dysplasia, ectrodactyly, and macular dystrophy, 225280
  601553 - Hypotrichosis, congenital, with juvenile macular dystrophy, 601553
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 cdh1ENSDARG00000102750Danio rerio
 cdh28ENSDARG00000104332Danio rerio
 cdh30ENSDARG00000104440Danio rerio
 cdh31ENSDARG00000035796Danio rerio
 si:dkey-30c15.12ENSDARG00000058546Danio rerio
 Cdh3ENSMUSG00000061048Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
CDH1 / P12830 / cadherin 1ENSG0000003906857
CDH2 / P19022 / cadherin 2ENSG0000017055844
CDH4 / P55283 / cadherin 4ENSG0000017924243
CDH15 / P55291 / cadherin 15ENSG0000012991037
DSC2 / Q02487 / desmocollin 2ENSG0000013475531
DSC3 / Q14574 / desmocollin 3ENSG0000013476231
CDH13 / P55290 / cadherin 13ENSG0000014094530
DSC1 / Q08554 / desmocollin 1ENSG0000013476529
CDH26 / Q8IXH8 / cadherin 26ENSG0000012421528


Protein motifs (from Interpro)
Interpro ID Name
 IPR000233  Cadherin, cytoplasmic domain
 IPR002126  Cadherin
 IPR014868  Cadherin prodomain
 IPR015919  Cadherin-like
 IPR020894  Cadherin conserved site
 IPR027397  Catenin binding domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001895 retina homeostasis IMP
 biological_processGO:0007155 cell adhesion TAS
 biological_processGO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules IEA
 biological_processGO:0007601 visual perception IEA
 biological_processGO:0010628 positive regulation of gene expression IMP
 biological_processGO:0010838 positive regulation of keratinocyte proliferation IMP
 biological_processGO:0022405 hair cycle process IMP
 biological_processGO:0031424 keratinization IMP
 biological_processGO:0032773 positive regulation of monophenol monooxygenase activity IMP
 biological_processGO:0032912 negative regulation of transforming growth factor beta2 production IMP
 biological_processGO:0034332 adherens junction organization TAS
 biological_processGO:0042060 wound healing IEA
 biological_processGO:0042493 response to drug IEA
 biological_processGO:0043568 positive regulation of insulin-like growth factor receptor signaling pathway IMP
 biological_processGO:0048023 positive regulation of melanin biosynthetic process IMP
 biological_processGO:0050896 response to stimulus IEA
 biological_processGO:0051796 negative regulation of timing of catagen IMP
 biological_processGO:0060070 canonical Wnt signaling pathway IMP
 biological_processGO:0060901 regulation of hair cycle by canonical Wnt signaling pathway IMP
 biological_processGO:0098609 cell-cell adhesion IEA
 biological_processGO:1902910 positive regulation of melanosome transport IMP
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005886 plasma membrane TAS
 cellular_componentGO:0005913 cell-cell adherens junction IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0003674 molecular_function ND
 molecular_functionGO:0005509 calcium ion binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
Adherens junctions interactions


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000164 Abnormality of the teeth "Any abnormality of the primary (deciduous) or permanent teeth." [HPO:curators]
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 HP:0000486 Strabismus "Strabismus (also known as squint) is a condition in which the eyes are not properly aligned with each other." [HPO:curators]
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 HP:0000488 Retinopathy 
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 HP:0000504 Abnormality of vision "Abnormality of eyesight (visual perception)." [HPO:curators]
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 HP:0000535 Sparse eyebrows 
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 HP:0000548 Cone-rod dystrophy 
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 HP:0000608 Macular degeneration 
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 HP:0000618 Blindness 
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 HP:0000639 Nystagmus "Rhythmic, involuntary oscillations of one or both eyes related to abnormality in fixation, conjugate gaze, or vestibular mechanisms." [HPO:curators]
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 HP:0000653 Sparse eyelashes "Decreased density/number of eyelashes." [pmid:19125427]
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 HP:0000670 Carious teeth 
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 HP:0000687 Widely spaced teeth 
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 HP:0000691 Microdontia 
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 HP:0000962 Hyperkeratosis "Hyperkeratosis is thickening of the outer layer of the skin, the stratum corneum, which is composed of large, polyhedral, plate-like envelopes filled with keratin which are the dead cells that have migrated up from the stratum granulosum." [HPO:curators]
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 HP:0000968 Ectodermal dysplasia 
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 HP:0000995 Pigmented nevi "The presence of increased numbers of pigmented nevi, that is, of small, dark spots on the skin. Pigmented nevi are also known as melanocytic nevi or moles." [HPO:curators]
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 HP:0001006 Hypotrichosis "Reduced or lacking hair growth." [HPO:curators]
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 HP:0001159 Syndactyly "Webbing or fusion of the fingers or toes, involving soft parts only or including bone structure. Bony fusions are revered to as "bony" Syndactyly if the fusion occurs in a radio-ulnar axis. Fusions of bones of the fingers or toes in a proximo-distal axis are refered to as "Symphalangism"." [HPO:curators]
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 HP:0001171 Ectrodactyly (hands) 
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 HP:0001480 Freckling 
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 HP:0001592 Selective tooth agenesis 
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 HP:0001597 Abnormality of the nails "Abnormality of the fingernails or toenails." [HPO:curators]
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 HP:0002209 Sparse scalp hair "Sparseness of the `head hair` (FMA:54241)." [HPO:probinson]
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 HP:0002213 Fine hair 
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 HP:0002223 Absent eyebrows 
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 HP:0002231 Sparse body hair "Sparseness of the body hair." [HPO:probinson]
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 HP:0002299 Fine, brittle hair 
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 HP:0002652 Skeletal dysplasia 
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 HP:0002813 Abnormality of the extremities "Any abnormality of the arms or legs." [HPO:curators]
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 HP:0003777 Pili torti "Pili (from Latin pilus, hair) torti (from Latin tortus, twisted) refers to short and brittle hairs that appear flattened and twisted when viewed through a microscope." [HPO:curators]
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 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
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 HP:0006101 Finger syndactyly "Webbing or fusion of the fingers, involving soft parts only or including bone structure. Bony fusions are revered to as "bony" Syndactyly if the fusion occurs in a radio-ulnar axis. Fusions of bones of the fingers in a proximo-distal axis are refered to as "Symphalangism"." [HPO:curators]
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 HP:0007663 Decreased central vision 
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 HP:0007703 Abnormal retinal pigmentation 
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 HP:0007754 Macular dystrophy 
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 HP:0008002 Macular pigmentary changes 
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 HP:0009473 Joint contractures involving the joints of the hand 
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 HP:0012385 Camptodactyly "The distal interphalangeal joint and/or the proximal interphalangeal joint of the fingers or toes cannot be extended to 180 degrees by either active or passive extension." [HPO:probinson]
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 HP:0100257 Ectrodactyly "A condition in which middle parts of the hands and/or feet (digits and meta-carpals and -tarsals) are missing giving a cleft appearance. The severity is very variable ranging from slightly hypoplastic 3rd toe/fingers over absent 2nd or 3rd toes/fingers as far as oligo- or monodactyl hands and/or feet." [HPO:sdoelken]
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 HP:0100326 Immunologic hypersensitivity 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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