ENSG00000039068


Homo sapiens

Features
Gene ID: ENSG00000039068
  
Biological name :CDH1
  
Synonyms : cadherin 1 / CDH1 / P12830
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 16
Strand: 1
Band: q22.1
Gene start: 68737225
Gene end: 68835548
  
Corresponding Affymetrix probe sets: 201130_s_at (Human Genome U133 Plus 2.0 Array)   201131_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000458139
Ensembl peptide - ENSP00000454782
Ensembl peptide - ENSP00000463170
Ensembl peptide - ENSP00000481063
Ensembl peptide - ENSP00000480664
Ensembl peptide - ENSP00000478360
Ensembl peptide - ENSP00000261769
Ensembl peptide - ENSP00000414946
NCBI entrez gene - 999     See in Manteia.
OMIM - 192090
RefSeq - XM_011523489
RefSeq - NM_001317184
RefSeq - NM_001317185
RefSeq - NM_001317186
RefSeq - NM_004360
RefSeq - XM_011523488
RefSeq Peptide - NP_004351
RefSeq Peptide - NP_001304113
RefSeq Peptide - NP_001304114
RefSeq Peptide - NP_001304115
swissprot - A0A087WXI5
swissprot - A0A087WX17
swissprot - H3BNC6
swissprot - J3QKP1
swissprot - H3BVI7
swissprot - P12830
swissprot - A0A087WU43
swissprot - A0A0U2ZQU7
Ensembl - ENSG00000039068
  
Related genetic diseases (OMIM): 119580 - Blepharocheilodontic syndrome 1, 119580
  608089 - Endometrial carcinoma, somatic, 608089
  137215 - Gastric cancer, familial diffuse, with or without cleft lip and/or palate, 137215
  167000 - Ovarian carcinoma, somatic, 167000
  114480 - {Breast cancer, lobular}, 114480
  176807 - {Prostate cancer, susceptibility to}, 176807
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 cdh1ENSDARG00000102750Danio rerio
 cdh28ENSDARG00000104332Danio rerio
 cdh30ENSDARG00000104440Danio rerio
 cdh31ENSDARG00000035796Danio rerio
 si:dkey-30c15.12ENSDARG00000058546Danio rerio
 CDH1ENSGALG00000000608Gallus gallus
 Cdh1ENSMUSG00000000303Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
CDH3 / P22223 / cadherin 3ENSG0000006203854
CDH2 / P19022 / cadherin 2ENSG0000017055848
CDH4 / P55283 / cadherin 4ENSG0000017924246
CDH15 / P55291 / cadherin 15ENSG0000012991036
DSC1 / Q08554 / desmocollin 1ENSG0000013476531
DSC2 / Q02487 / desmocollin 2ENSG0000013475530
DSC3 / Q14574 / desmocollin 3ENSG0000013476230
CDH13 / P55290 / cadherin 13ENSG0000014094530
CDH26 / Q8IXH8 / cadherin 26ENSG0000012421526


Protein motifs (from Interpro)
Interpro ID Name
 IPR000233  Cadherin, cytoplasmic domain
 IPR002126  Cadherin
 IPR014868  Cadherin prodomain
 IPR015919  Cadherin-like
 IPR020894  Cadherin conserved site
 IPR021157  Cytochrome c1, transmembrane anchor, C-terminal
 IPR027397  Catenin binding domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007155 cell adhesion IEA
 biological_processGO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules IEA
 biological_processGO:0007416 synapse assembly IEA
 biological_processGO:0009636 response to toxic substance IEA
 biological_processGO:0010033 response to organic substance IEA
 biological_processGO:0021983 pituitary gland development IEA
 biological_processGO:0022408 negative regulation of cell-cell adhesion IMP
 biological_processGO:0022617 extracellular matrix disassembly TAS
 biological_processGO:0030198 extracellular matrix organization TAS
 biological_processGO:0031175 neuron projection development IEA
 biological_processGO:0034332 adherens junction organization IMP
 biological_processGO:0035635 entry of bacterium into host cell TAS
 biological_processGO:0042493 response to drug IEA
 biological_processGO:0042993 obsolete positive regulation of transcription factor import into nucleus IDA
 biological_processGO:0045893 positive regulation of transcription, DNA-templated IDA
 biological_processGO:0071285 cellular response to lithium ion IDA
 biological_processGO:0071681 cellular response to indole-3-methanol IDA
 biological_processGO:0072659 protein localization to plasma membrane IDA
 biological_processGO:0098609 cell-cell adhesion IDA
 cellular_componentGO:0005576 extracellular region TAS
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005768 endosome IEA
 cellular_componentGO:0005794 Golgi apparatus IEA
 cellular_componentGO:0005802 trans-Golgi network IMP
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0005913 cell-cell adherens junction IDA
 cellular_componentGO:0009898 cytoplasmic side of plasma membrane IDA
 cellular_componentGO:0015629 actin cytoskeleton IDA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0016328 lateral plasma membrane IDA
 cellular_componentGO:0016342 catenin complex IDA
 cellular_componentGO:0016600 flotillin complex IDA
 cellular_componentGO:0030027 lamellipodium IDA
 cellular_componentGO:0030054 cell junction TAS
 cellular_componentGO:0030864 cortical actin cytoskeleton IDA
 cellular_componentGO:0043296 apical junction complex IDA
 cellular_componentGO:0048471 perinuclear region of cytoplasm IDA
 cellular_componentGO:0070062 extracellular exosome HDA
 molecular_functionGO:0005509 calcium ion binding IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0008013 beta-catenin binding IDA
 molecular_functionGO:0030506 ankyrin binding IPI
 molecular_functionGO:0032794 GTPase activating protein binding IPI
 molecular_functionGO:0042802 identical protein binding IPI
 molecular_functionGO:0045295 gamma-catenin binding IPI
 molecular_functionGO:0045296 cadherin binding IDA
 molecular_functionGO:0046872 metal ion binding IEA
 molecular_functionGO:0050839 cell adhesion molecule binding NAS


Pathways (from Reactome)
Pathway description
Degradation of the extracellular matrix
Immunoregulatory interactions between a Lymphoid and a non-Lymphoid cell
Integrin cell surface interactions
Apoptotic cleavage of cell adhesion proteins
Adherens junctions interactions
RHO GTPases activate IQGAPs
InlA-mediated entry of Listeria monocytogenes into host cells


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000175 Cleft palate "Cleft palate is a developmental defect of the `palate` (FMA:54549) resulting from a failure of fusion of the palatine processes." [HPO:curators]
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 HP:0000204 Cleft lip "A gap in the `upper lip` (FMA:59817). This is a congenital defect resulting from nonfusion of tissues of the lip during embryonal development." [HPO:probinson]
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 HP:0000316 Hypertelorism 
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 HP:0000405 Hearing loss, conductive 
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 HP:0000504 Abnormality of vision "Abnormality of eyesight (visual perception)." [HPO:curators]
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 HP:0000668 Hypodontia "Hypodontia describes a situation when there are fewer than the normal number of teeth, whereby 6 teeth or fewer teeth are missing (oligodontia refers to the condition of missing more than 6 teeth and the congenital absence of all teeth is called anodontia)." [HPO:curators]
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 HP:0000670 Carious teeth 
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 HP:0000698 Conical teeth 
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 HP:0001792 Nail hypoplasia "Underdeveloped `fingernails` (FMA:54327) or `toenails` (FMA:54328)." [HPO:probinson]
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 HP:0001939 Metabolism abnormality 
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 HP:0002023 Anal atresia "Congenital absence of the anus, i.e., the opening at the bottom end of the intestinal tract." [HPO:curators]
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 HP:0002582 Chronic atrophic gastritis 
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 HP:0002744 Bilateral cleft lip/palate "Cleft lip/palate affecting both sides of the face." [HPO:curators]
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 HP:0003002 Breast cancer 
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 HP:0006101 Finger syndactyly "Webbing or fusion of the fingers, involving soft parts only or including bone structure. Bony fusions are revered to as "bony" Syndactyly if the fusion occurs in a radio-ulnar axis. Fusions of bones of the fingers in a proximo-distal axis are refered to as "Symphalangism"." [HPO:curators]
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 HP:0006774 Ovarian papillary adenocarcinoma 
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 HP:0007651 Mildly everted lower eyelids 
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 HP:0009743 Distichiasis "Distichiasis refers to ouble rows of eyelashes." [HPO:curators]
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 HP:0011362 Abnormal hair quantity "An abnormal amount of hair." [DDD:cmoss]
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 HP:0012114 Endometrial carcinoma "A carcinoma of the endometrium, the mucous lining of the uterus." [HPO:probinson]
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 HP:0012126 Stomach cancer "A cancer arising in any part of the stomach." [HPO:probinson]
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 HP:0012905 Euryblepharon "Euryblepharon is a congenital eyelid anomaly characterized by horizontal enlargement of the palpebral fissure. The eyelid is shortened vertically compared with the horizontal dimension, with associated lateral canthal malpositioning and lateral ectropion abnormally wide lid opening." [HPO:probinson, pmid:15249382, pmid:15530943, pmid:24719364]
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 HP:0030084 Clinodactyly "An angulation of a digit at an interphalangeal joint in the plane of the palm (finger) or sole (toe)." [pmid:16252026]
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 HP:0100621 Dysgerminoma "The presence of a `dysgerminoma` (MPATH:312), i.e., an undifferentiated germ cell tumor of the `ovary` (FMA:7209)." [HPO:sdoelken]
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 HP:0200040 Skin cysts "The presence of one or more `cysts` (MPATH:62) of the `skin` (FMA:7163)." [HPO:skoehler]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000105879 CBLL1 / Q75N03 / Cbl proto-oncogene like 1  / complex / reaction
 ENSG00000126247 CAPNS1 / P04632 / calpain small subunit 1  / reaction
 ENSG00000039068 CDH1 / P12830 / cadherin 1  / complex
 ENSG00000140575 IQGAP1 / P46940 / IQ motif containing GTPase activating protein 1  / reaction / complex
 ENSG00000139187 KLRG1 / Q96E93 / killer cell lectin like receptor G1  / reaction / complex
 ENSG00000044115 CTNNA1 / P35221 / catenin alpha 1  / complex
 ENSG00000168036 CTNNB1 / P35222 / catenin beta 1  / complex
 ENSG00000139626 ITGB7 / P26010 / integrin subunit beta 7  / complex / reaction
 ENSG00000137845 ADAM10 / O14672 / ADAM metallopeptidase domain 10  / reaction
 ENSG00000137673 MMP7 / P09237 / matrix metallopeptidase 7  / reaction
 ENSG00000083457 ITGAE / P38570 / integrin subunit alpha E  / complex / reaction
 ENSG00000014216 CAPN1 / P07384 / calpain 1  / reaction
 ENSG00000143537 ADAM15 / Q13444 / ADAM metallopeptidase domain 15  / reaction
 ENSG00000122194 PLG / P00747 / plasminogen  / reaction
 ENSG00000133895 MEN1 / O00255 / menin 1  / complex / reaction
 ENSG00000164305 CASP3 / P42574 / caspase 3  / reaction
 ENSG00000169035 KLK7 / P49862 / kallikrein related peptidase 7  / reaction
 ENSG00000162736 NCSTN / Q92542 / nicastrin  / reaction
 ENSG00000149968 MMP3 / P08254 / matrix metallopeptidase 3  / reaction
 ENSG00000080815 PSEN1 / P49768 / presenilin 1  / reaction
 ENSG00000198561 CTNND1 / O60716 / catenin delta 1  / complex
 ENSG00000100985 MMP9 / P14780 / matrix metallopeptidase 9  / reaction






 

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