ENSG00000090932


Homo sapiens

Features
Gene ID: ENSG00000090932
  
Biological name :DLL3
  
Synonyms : delta like canonical Notch ligand 3 / DLL3 / Q9NYJ7
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 19
Strand: 1
Band: q13.2
Gene start: 39498895
Gene end: 39508481
  
Corresponding Affymetrix probe sets: 219537_x_at (Human Genome U133 Plus 2.0 Array)   222898_s_at (Human Genome U133 Plus 2.0 Array)   229755_x_at (Human Genome U133 Plus 2.0 Array)   230568_x_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000348810
Ensembl peptide - ENSP00000205143
Ensembl peptide - ENSP00000471688
NCBI entrez gene - 10683     See in Manteia.
OMIM - 602768
RefSeq - NM_203486
RefSeq - NM_016941
RefSeq Peptide - NP_058637
RefSeq Peptide - NP_982353
swissprot - Q9NYJ7
swissprot - M0R177
Ensembl - ENSG00000090932
  
Related genetic diseases (OMIM): 277300 - Spondylocostal dysostosis 1, autosomal recessive, 277300
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 CR456624.1ENSDARG00000079519Danio rerio
 Dll3ENSMUSG00000003436Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
CRB2 / Q5IJ48 / crumbs 2, cell polarity complex componentENSG0000014820425
CRB1 / P82279 / crumbs 1, cell polarity complex componentENSG0000013437624
DNER / Q8NFT8 / delta/notch like EGF repeat containingENSG0000018795720
SLIT3 / O75094 / slit guidance ligand 3ENSG0000018434719
SLIT1 / O75093 / slit guidance ligand 1ENSG0000018712219
SLIT2 / O94813 / slit guidance ligand 2ENSG0000014514719
DLK2 / Q6UY11 / delta like non-canonical Notch ligand 2ENSG0000017146211
DLK1 / P80370 / delta like non-canonical Notch ligand 1ENSG0000018555911


Protein motifs (from Interpro)
Interpro ID Name
 IPR000742  EGF-like domain
 IPR001881  EGF-like calcium-binding domain
 IPR009030  Growth factor receptor cysteine-rich domain superfamily
 IPR011651  Notch ligand, N-terminal domain
 IPR013032  EGF-like, conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001501 skeletal system development IEA
 biological_processGO:0001756 somitogenesis IEA
 biological_processGO:0007219 Notch signaling pathway IEA
 biological_processGO:0007275 multicellular organism development IEA
 biological_processGO:0007386 compartment pattern specification IEA
 biological_processGO:0009888 tissue development IEA
 biological_processGO:0030154 cell differentiation IEA
 biological_processGO:0048339 paraxial mesoderm development IEA
 biological_processGO:0050768 negative regulation of neurogenesis IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane NAS
 molecular_functionGO:0005112 Notch binding NAS
 molecular_functionGO:0005509 calcium ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000008 Abnormality of female internal genitalia 
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 HP:0000023 Inguinal hernia 
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 HP:0000028 Cryptorchidism "Absence of one or both testes from the scrotum owing to failure of the testis or testes to descend through the inguinal canal to the testis." [HPO:curators]
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 HP:0000047 Hypospadias "Displacement of the urethral opening on the ventral (inferior) surface of the penis." [HPO:curators]
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 HP:0000069 Abnormality of the ureters "An abnormality of the ureters, the ductal organs that transport urine from the kidneys to the urinary bladder." [HPO:curators]
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 HP:0000175 Cleft palate "Cleft palate is a developmental defect of the `palate` (FMA:54549) resulting from a failure of fusion of the palatine processes." [HPO:curators]
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 HP:0000252 Microcephaly "Microcephaly is a neurodevelopmental disorder in which the circumference of the head is more than two standard deviations smaller than the age- and gender-dependent norm." [HPO:curators]
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 HP:0000256 Macrocephaly "The presence of an abnormally large `skull` (FMA:46565)." [HPO:probinson]
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 HP:0000269 Prominent occiput 
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 HP:0000337 Broad forehead "Abnormally large side-to-side distance of the forehead." [HPO:curators]
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 HP:0000343 Long philtrum 
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 HP:0000368 Low-set, posteriorly rotated ears 
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 HP:0000463 Nares, anteverted "Anteriorly-facing nostrils viewed with the head in the Frankfurt horizontal and the eyes of the observer level with the eyes of the subject." [pmid:19152422]
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 HP:0000470 Short neck 
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 HP:0000776 Diaphragmatic hernia "Diaphragmatic hernia is the result of a developmental defect causing an abnormal opening in the diaphragm, through which abdominal organs (stomach, spleen, liver, and intestines) can protrude into the thoracic cavity. This usually causes respiratory distress in the newborn period." [HPO:curators]
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 HP:0000902 Rib fusion 
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 HP:0001249 Mental retardation 
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 HP:0001511 Intrauterine growth retardation 
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 HP:0001522 Death in infancy 
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 HP:0001537 Umbilical hernia "Protrusion of abdominal contents through a defect in the abdominal wall musculature around the umbilicus. Skin and subcutaneous tissue overlie the defect." [HPO:curators]
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 HP:0002093 Respiratory insufficiency 
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 HP:0002205 Recurrent respiratory infections 
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 HP:0002435 Meningocele 
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 HP:0002650 Scoliosis "The presence of an abnormal lateral curvature of the spine." [HPO:curators]
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 HP:0002808 Kyphosis 
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 HP:0002937 Hemivertebrae 
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 HP:0003298 Spina bifida occulta "The closed form of spina bifida." [HPO:curators]
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 HP:0003305 Block vertebrae 
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 HP:0003310 Abnormality of the odontoid process 
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 HP:0003312 Abnormal form of the vertebral bodies 
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 HP:0003422 Vertebral segmentation defects 
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 HP:0003510 Short stature, severe "A severe degree of short stature." [HPO:curators]
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 HP:0003521 Short stature, disproportionate (short trunk) 
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 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
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 HP:0005108 Abnormality of the intervertebral disks 
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 HP:0005280 Depressed nasal root and bridge 
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 HP:0006101 Finger syndactyly "Webbing or fusion of the fingers, involving soft parts only or including bone structure. Bony fusions are revered to as "bony" Syndactyly if the fusion occurs in a radio-ulnar axis. Fusions of bones of the fingers in a proximo-distal axis are refered to as "Symphalangism"." [HPO:curators]
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 HP:0006655 Rib segmentation abnormalities 
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 HP:0010306 Short thorax "Reduced inferior to superior extent of the thorax." [HPO:curators]
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 HP:0010772 Anomalous pulmonary venous return "A developmental defect characterized by abnormal connection of or more pulmonary veins to the superior or inferior vena cava, the right atrium, or the coronary sinus, resulting in a left-to-right shunt of oxygenated blood." [HPO:probinson]
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 HP:0010978 Abnormality of immune system physiology "A functional abnormality of the `immune system` (FMA:9825)." [HPO:probinson, MP:0001790]
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 HP:0100490 Camptodactyly (hands) "Contractures of one ore more joints of the fingers." [HPO:sdoelken]
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 HP:0100589 Urogenital fistula "The presence of a `fistula` (MPATH:70) affecting the `genitourinary system` (FMA:280610)." [HPO:probinson]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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