ENSG00000100478


Homo sapiens

Features
Gene ID: ENSG00000100478
  
Biological name :AP4S1
  
Synonyms : adaptor related protein complex 4 sigma 1 subunit / AP4S1 / Q9Y587
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 14
Strand: 1
Band: q12
Gene start: 31025106
Gene end: 31096450
  
Corresponding Affymetrix probe sets: 210277_at (Human Genome U133 Plus 2.0 Array)   210278_s_at (Human Genome U133 Plus 2.0 Array)   210952_at (Human Genome U133 Plus 2.0 Array)   235647_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000477631
Ensembl peptide - ENSP00000452383
Ensembl peptide - ENSP00000482876
Ensembl peptide - ENSP00000216366
Ensembl peptide - ENSP00000322508
Ensembl peptide - ENSP00000334484
Ensembl peptide - ENSP00000438170
Ensembl peptide - ENSP00000450768
Ensembl peptide - ENSP00000451479
Ensembl peptide - ENSP00000451609
Ensembl peptide - ENSP00000451614
Ensembl peptide - ENSP00000451918
NCBI entrez gene - 11154     See in Manteia.
OMIM - 607243
RefSeq - XM_011536372
RefSeq - NM_001128126
RefSeq - NM_001254726
RefSeq - NM_001254727
RefSeq - NM_001254728
RefSeq - NM_001254729
RefSeq - NM_007077
RefSeq - XM_005267293
RefSeq - XM_011536371
RefSeq Peptide - NP_001121598
RefSeq Peptide - NP_001241655
RefSeq Peptide - NP_001241656
RefSeq Peptide - NP_001241657
RefSeq Peptide - NP_001241658
RefSeq Peptide - NP_009008
swissprot - G3V5J6
swissprot - A0A0G2JL90
swissprot - G3V3X7
swissprot - G3V4P7
swissprot - Q9Y587
swissprot - H0YJI3
Ensembl - ENSG00000100478
  
Related genetic diseases (OMIM): 614067 - Spastic paraplegia 52, autosomal recessive, 614067
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ap4s1ENSDARG00000054220Danio rerio
 AP4S1ENSGALG00000009936Gallus gallus
 Ap4s1ENSMUSG00000020955Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
AP2S1 / P53680 / adaptor related protein complex 2 sigma 1 subunitENSG0000004275329
AP1S1 / P61966 / adaptor related protein complex 1 sigma 1 subunitENSG0000010636727
AP1S2 / P56377 / adaptor related protein complex 1 sigma 2 subunitENSG0000018228727
AP1S3 / Q96PC3 / adaptor related protein complex 1 sigma 3 subunitENSG0000015205626


Protein motifs (from Interpro)
Interpro ID Name
 IPR011012  Longin-like domain superfamily
 IPR016635  Adaptor protein complex, sigma subunit
 IPR022775  AP complex, mu/sigma subunit


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006605 protein targeting IC
 biological_processGO:0008104 protein localization IC
 biological_processGO:0015031 protein transport IEA
 cellular_componentGO:0005794 Golgi apparatus IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0030124 AP-4 adaptor complex IDA
 cellular_componentGO:0031904 endosome lumen TAS
 cellular_componentGO:0032588 trans-Golgi network membrane TAS
 cellular_componentGO:0043231 intracellular membrane-bounded organelle IDA
 molecular_functionGO:0008565 protein transporter activity IEA


Pathways (from Reactome)
Pathway description
Lysosome Vesicle Biogenesis


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000154 Wide mouth "Abnormally wide mouth." [HPO:curators]
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 HP:0000218 High palate "Height of the palate more than 2 SD above the mean (objective) or palatal height at the level of the first permanent molar more than twice the height of the teeth (subjective)." [pmid:19125428]
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 HP:0000252 Microcephaly "Microcephaly is a neurodevelopmental disorder in which the circumference of the head is more than two standard deviations smaller than the age- and gender-dependent norm." [HPO:curators]
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 HP:0000280 Coarse facial features 
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 HP:0000297 Facial hypotonia 
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 HP:0000316 Hypertelorism 
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 HP:0000322 Short philtrum 
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 HP:0000414 Bulbous nose 
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 HP:0000431 Broad nasal bridge "Increased horizontal dimension of the upper, bony part of the nose." [HPO:curators]
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 HP:0000448 Prominent nose 
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 HP:0001257 Spasticity "A motor disorder characterized by a velocity-dependent increase in tonic stretch reflexes with increased muscle tone, exaggerated (hyperexcitable) tendon reflexes." [HPO:curators]
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 HP:0001258 Spastic paraplegia 
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001347 Hyperreflexia "The presence of overactive or overresponsive reflexes." [HPO:curators]
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 HP:0001371 Contractures 
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 HP:0001762 Talipes equinovarus "Also called clubfoot typically has 4 main components: inversion and adduction of the forefoot; inversion of the heel and hindfoot; equinus (limitation of extension) of the ankle and subtalar joint; and internal rotation of the leg. Clubfoot is a complex, multifactorial deformity with genetic and intrauterine factors. One popular theory postulates that a clubfoot is a result of intrauterine maldevelopment of the talus that leads to adduction and plantarflexion of the foot. On radiographic projection a clubfoot can be noted as parallel axes of talus and calcaneus." [HPO:curators]
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 HP:0002373 Febrile seizures "Febrile seizures are convulsions induced by a fever in infants or small children and are generally characterized by loss of consciousness and tonic-clonic movements. Most febrile seizures last a minute or two." [HPO:curators]
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 HP:0003487 Babinski sign "Upturning of the big toe (and sometimes fanning of the other toes) in response to stimulation of the sole of the foot. If the Babinski sign is present it can indicate damage to the corticospinal tract." [HPO:curators]
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 HP:0003577 Onset at birth 
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 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
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 HP:0006957 Loss of ability to walk 
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 HP:0007359 Partial seizures "Recurrent partial `seizures` (HP:0001250). In a partial seizure, the electrical disturbance is limited to one part or side of the brain. That is, partial epilepsies are epileptic disorders in which clinical or laboratory findings disclose a localized origin of seizures." [HPO:curators]
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 HP:0008936 Muscular hypotonia of the trunk "Muscular hypotonia (abnormally low muscle tone) affecting the musculature of the trunk." [HPO:curators]
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 HP:0010864 Mental retardation, severe "Moderate mental retardation is defined as an intelligence quotient (IQ) in the range of 20-34." [HPO:probinson]
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 HP:0012471 Thick vermilion border "Increased width of the "skin of vermilion border region of upper lip" (FMA:312645)." [HPO:probinson]
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 HP:0100021 Cerebral paralysis "Cerebral palsy describes a group of permanent disorders of the development of movement and posture, causing activity limitation, that are attributed to nonprogressive disturbances that occurred in the developing fetal or infant brain. The motor disorders of cerebral palsy are often accompanied by disturbances of sensation, perception, cognition, communication, and behaviour, by epilepsy, and by secondary musculoskeletal problems." [HPO:sdoelken]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000221838 AP4M1 / O00189 / adaptor related protein complex 4 mu 1 subunit  / complex
 ENSG00000142192 APP / P05067 / amyloid beta precursor protein  / reaction / complex
 ENSG00000134262 AP4B1 / Q9Y6B7 / adaptor related protein complex 4 beta 1 subunit  / complex
 ENSG00000081014 AP4E1 / Q9UPM8 / adaptor related protein complex 4 epsilon 1 subunit  / complex






 

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