ENSG00000221838


Homo sapiens

Features
Gene ID: ENSG00000221838
  
Biological name :AP4M1
  
Synonyms : adaptor related protein complex 4 mu 1 subunit / AP4M1 / O00189
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 7
Strand: 1
Band: q22.1
Gene start: 100101549
Gene end: 100110345
  
Corresponding Affymetrix probe sets: 209837_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000401613
Ensembl peptide - ENSP00000403663
Ensembl peptide - ENSP00000414286
Ensembl peptide - ENSP00000412185
Ensembl peptide - ENSP00000406676
Ensembl peptide - ENSP00000406106
Ensembl peptide - ENSP00000352603
Ensembl peptide - ENSP00000377625
Ensembl peptide - ENSP00000391585
Ensembl peptide - ENSP00000393723
Ensembl peptide - ENSP00000396928
Ensembl peptide - ENSP00000400598
NCBI entrez gene - 9179     See in Manteia.
OMIM - 602296
RefSeq - XM_017012791
RefSeq - NM_004722
RefSeq - XM_005250689
RefSeq - XM_005250690
RefSeq - XM_006716175
RefSeq - XM_011516685
RefSeq - XM_017012790
RefSeq Peptide - NP_004713
swissprot - H7BZV3
swissprot - C9JWL4
swissprot - O00189
swissprot - H7C0A0
swissprot - C9JMG3
swissprot - C9JC87
swissprot - C9IZL5
swissprot - F8WCC5
swissprot - F8WCR6
swissprot - F8WDR3
swissprot - H0Y6K1
Ensembl - ENSG00000221838
  
Related genetic diseases (OMIM): 612936 - Spastic paraplegia 50, autosomal recessive, 612936
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ap4m1ENSDARG00000056871Danio rerio
 Ap4m1ENSMUSG00000019518Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
AP1M1 / Q9BXS5 / adaptor related protein complex 1 mu 1 subunitENSG0000007295827
AP2M1 / Q96CW1 / adaptor related protein complex 2 mu 1 subunitENSG0000016120327
AP1M2 / Q9Y6Q5 / adaptor related protein complex 1 mu 2 subunitENSG0000012935427
AP3M1 / Q9Y2T2 / adaptor related protein complex 3 mu 1 subunitENSG0000018500922
AP3M2 / P53677 / adaptor related protein complex 3 mu 2 subunitENSG0000007071822


Protein motifs (from Interpro)
Interpro ID Name
 IPR001392  Clathrin adaptor, mu subunit
 IPR011012  Longin-like domain superfamily
 IPR018240  Clathrin adaptor, mu subunit, conserved site
 IPR022775  AP complex, mu/sigma subunit
 IPR028565  Mu homology domain
 IPR036168  AP-2 complex subunit mu, C-terminal superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006605 protein targeting IDA
 biological_processGO:0006622 protein targeting to lysosome IDA
 biological_processGO:0006886 intracellular protein transport IEA
 biological_processGO:0006895 Golgi to endosome transport IMP
 biological_processGO:0008104 protein localization ISS
 biological_processGO:0015031 protein transport IEA
 biological_processGO:0016192 vesicle-mediated transport IEA
 biological_processGO:0090160 Golgi to lysosome transport IDA
 biological_processGO:1903361 protein localization to basolateral plasma membrane ISS
 cellular_componentGO:0005768 endosome IEA
 cellular_componentGO:0005769 early endosome ISS
 cellular_componentGO:0005794 Golgi apparatus IEA
 cellular_componentGO:0005802 trans-Golgi network IDA
 cellular_componentGO:0005829 cytosol IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0030124 AP-4 adaptor complex IDA
 cellular_componentGO:0030131 clathrin adaptor complex IEA
 cellular_componentGO:0031904 endosome lumen TAS
 cellular_componentGO:0032588 trans-Golgi network membrane TAS
 cellular_componentGO:0070062 extracellular exosome HDA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0019904 protein domain specific binding IDA


Pathways (from Reactome)
Pathway description
Lysosome Vesicle Biogenesis


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000154 Wide mouth "Abnormally wide mouth." [HPO:curators]
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 HP:0000218 High palate "Height of the palate more than 2 SD above the mean (objective) or palatal height at the level of the first permanent molar more than twice the height of the teeth (subjective)." [pmid:19125428]
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 HP:0000252 Microcephaly "Microcephaly is a neurodevelopmental disorder in which the circumference of the head is more than two standard deviations smaller than the age- and gender-dependent norm." [HPO:curators]
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 HP:0000280 Coarse facial features 
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 HP:0000303 Mandibular prognathia "Abnormal prominence of the chin related to an abnormally long mandible." [HPO:curators]
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 HP:0000322 Short philtrum 
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 HP:0000341 Narrow forehead "An abnormally reduced side-to-side width of the forehead." [HPO:curators]
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 HP:0000414 Bulbous nose 
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 HP:0000486 Strabismus "Strabismus (also known as squint) is a condition in which the eyes are not properly aligned with each other." [HPO:curators]
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 HP:0001181 Adducted thumbs 
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001258 Spastic paraplegia 
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001272 Cerebellar atrophy 
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 HP:0001319 Neonatal hypotonia "Muscular hypotonia (abnormally low muscle tone) manifesting in the neonatal period." [HPO:curators]
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 HP:0001347 Hyperreflexia "The presence of overactive or overresponsive reflexes." [HPO:curators]
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 HP:0001762 Talipes equinovarus "Also called clubfoot typically has 4 main components: inversion and adduction of the forefoot; inversion of the heel and hindfoot; equinus (limitation of extension) of the ankle and subtalar joint; and internal rotation of the leg. Clubfoot is a complex, multifactorial deformity with genetic and intrauterine factors. One popular theory postulates that a clubfoot is a result of intrauterine maldevelopment of the talus that leads to adduction and plantarflexion of the foot. On radiographic projection a clubfoot can be noted as parallel axes of talus and calcaneus." [HPO:curators]
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 HP:0002079 Hypoplasia of the corpus callosum "Underdevelopment of the corpus callosum." [HPO:curators]
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 HP:0002119 Ventriculomegaly 
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 HP:0002171 Gliosis 
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 HP:0002200 Pseudobulbar signs "Pseudobulbar signs result from injury to an upper motor neuron lesion to the corticobulbar pathways in the pyramidal tract. Patients have difficulty chewing, swallowing and demonstrate slurred speach (often initial presentation) as well as abnormal behavioral symptoms such as inappropriate emotional outbursts of uncontrolled laughter or weeping etc." [HPO:sdoelken]
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 HP:0002307 Drooling 
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 HP:0002510 Spastic tetraplegia "Spastic paralysis affecting all four limbs." [HPO:curators]
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 HP:0003487 Babinski sign "Upturning of the big toe (and sometimes fanning of the other toes) in response to stimulation of the sole of the foot. If the Babinski sign is present it can indicate damage to the corticospinal tract." [HPO:curators]
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 HP:0003577 Onset at birth 
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 HP:0006887 Mental retardation, progressive "Mental retardation is defined as a decreased intelligence quotient of varying degree. The term progressive mental retardation should be used if intelligence decreases/deteriorates over time." [HPO:curators]
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 HP:0010864 Mental retardation, severe "Moderate mental retardation is defined as an intelligence quotient (IQ) in the range of 20-34." [HPO:probinson]
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 HP:0012811 Wide nasal ridge "Increased width of the nasal ridge." [HPO:probinson, pmid:19152422]
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 HP:0100021 Cerebral paralysis "Cerebral palsy describes a group of permanent disorders of the development of movement and posture, causing activity limitation, that are attributed to nonprogressive disturbances that occurred in the developing fetal or infant brain. The motor disorders of cerebral palsy are often accompanied by disturbances of sensation, perception, cognition, communication, and behaviour, by epilepsy, and by secondary musculoskeletal problems." [HPO:sdoelken]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000100478 AP4S1 / Q9Y587 / adaptor related protein complex 4 sigma 1 subunit  / complex
 ENSG00000134262 AP4B1 / Q9Y6B7 / adaptor related protein complex 4 beta 1 subunit  / complex
 ENSG00000081014 AP4E1 / Q9UPM8 / adaptor related protein complex 4 epsilon 1 subunit  / complex
 ENSG00000142192 APP / P05067 / amyloid beta precursor protein  / complex / reaction






 

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