ENSG00000106367


Homo sapiens

Features
Gene ID: ENSG00000106367
  
Biological name :AP1S1
  
Synonyms : adaptor related protein complex 1 sigma 1 subunit / AP1S1 / P61966
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 7
Strand: 1
Band: q22.1
Gene start: 101154400
Gene end: 101161596
  
Corresponding Affymetrix probe sets: 205195_at (Human Genome U133 Plus 2.0 Array)   205196_s_at (Human Genome U133 Plus 2.0 Array)   209635_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000410780
Ensembl peptide - ENSP00000496332
Ensembl peptide - ENSP00000496031
Ensembl peptide - ENSP00000336666
Ensembl peptide - ENSP00000399902
NCBI entrez gene - 1174     See in Manteia.
OMIM - 603531
RefSeq - NM_001283
RefSeq Peptide - NP_001274
swissprot - A0A024QYT6
swissprot - H7C1E4
swissprot - P61966
Ensembl - ENSG00000106367
  
Related genetic diseases (OMIM): 609313 - MEDNIK syndrome, 609313
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ap1s1ENSDARG00000056803Danio rerio
 Ap1s1ENSMUSG00000004849Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
AP1S2 / P56377 / adaptor related protein complex 1 sigma 2 subunitENSG0000018228787
AP1S3 / Q96PC3 / adaptor related protein complex 1 sigma 3 subunitENSG0000015205666
AP2S1 / P53680 / adaptor related protein complex 2 sigma 1 subunitENSG0000004275340
AP4S1 / Q9Y587 / adaptor related protein complex 4 sigma 1 subunitENSG0000010047827


Protein motifs (from Interpro)
Interpro ID Name
 IPR000804  Clathrin adaptor complex, small chain
 IPR011012  Longin-like domain superfamily
 IPR016635  Adaptor protein complex, sigma subunit
 IPR022775  AP complex, mu/sigma subunit


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006886 intracellular protein transport IEA
 biological_processGO:0006898 receptor-mediated endocytosis TAS
 biological_processGO:0009615 response to virus IEP
 biological_processGO:0015031 protein transport IEA
 biological_processGO:0016192 vesicle-mediated transport IEA
 biological_processGO:0019886 antigen processing and presentation of exogenous peptide antigen via MHC class II TAS
 biological_processGO:0042147 retrograde transport, endosome to Golgi IEA
 biological_processGO:0050690 regulation of defense response to virus by virus TAS
 cellular_componentGO:0000139 Golgi membrane TAS
 cellular_componentGO:0005765 lysosomal membrane TAS
 cellular_componentGO:0005794 Golgi apparatus IEA
 cellular_componentGO:0005829 cytosol TAS
 cellular_componentGO:0005905 clathrin-coated pit IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0030117 membrane coat IEA
 cellular_componentGO:0030121 AP-1 adaptor complex TAS
 cellular_componentGO:0030659 cytoplasmic vesicle membrane TAS
 cellular_componentGO:0031410 cytoplasmic vesicle IEA
 cellular_componentGO:0032588 trans-Golgi network membrane TAS
 cellular_componentGO:0043195 terminal bouton IEA
 cellular_componentGO:0043231 intracellular membrane-bounded organelle IDA
 cellular_componentGO:0070062 extracellular exosome HDA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0008565 protein transporter activity IEA


Pathways (from Reactome)
Pathway description
Nef mediated downregulation of MHC class I complex cell surface expression
MHC class II antigen presentation
Lysosome Vesicle Biogenesis
Golgi Associated Vesicle Biogenesis


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000348 High forehead "An abnormally increased height of the forehead." [HPO:curators]
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 HP:0000365 Hearing loss 
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 HP:0000518 Cataract "A cataract is an opacity or clouding that develops in the crystalline `lens` (FMA:58241) of the eye or in its `capsule` (FMA:58881)." [HPO:probinson]
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 HP:0000582 Upslanting palpebral fissures 
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 HP:0000962 Hyperkeratosis "Hyperkeratosis is thickening of the outer layer of the skin, the stratum corneum, which is composed of large, polyhedral, plate-like envelopes filled with keratin which are the dead cells that have migrated up from the stratum granulosum." [HPO:curators]
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 HP:0001249 Mental retardation 
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001290 Generalized hypotonia "Generalized muscular hypotonia (abnormally low muscle tone)." [HPO:curators]
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 HP:0001394 Cirrhosis 
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 HP:0001395 Hepatic fibrosis 
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 HP:0001396 Cholestasis 
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 HP:0001406 Intrahepatic cholestasis 
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 HP:0001510 Growth retardation 
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 HP:0002014 Diarrhea 
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 HP:0002242 Abnormality of the intestines 
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 HP:0003577 Onset at birth 
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 HP:0008064 Ichthyosiform abnormality of the skin 
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 HP:0009830 Peripheral neuropathy "Peripheral neuropathy is a general term for any disorder of the peripheral nervous system. The main clinical features used to classify peripheral neuropathy are distribution, type (mainly demyelinating versus mainly axonal), duration, and course." [HPO:curators]
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 HP:0010783 Erythema "Redness of the skin, caused by hyperemia of the capillaries in the lower layers of the skin." [HPO:probinson]
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 HP:0010837 Decreased serum ceruloplasmin "A kind of `Abnormality of copper homeostasis` (HP:0010836) related to a `decreased concentration` (PATO:0001163) of `ceruloplasmin` (PR:000005794) in the `blood` (FMA:9670)." [HPO:probinson]
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 HP:0011967 Hypocupremia "A reduced concentration of `copper` (CHEBI:28694) in the `blood` (FMA:9670)." [HPO:probinson]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000129354 AP1M2 / Q9Y6Q5 / adaptor related protein complex 1 mu 2 subunit  / complex
 ENSG00000072958 AP1M1 / Q9BXS5 / adaptor related protein complex 1 mu 1 subunit  / complex
 ENSG00000166747 AP1G1 / O43747 / adaptor related protein complex 1 gamma 1 subunit  / complex
 ENSG00000100280 AP1B1 / Q10567 / adaptor related protein complex 1 beta 1 subunit  / complex
 ENSG00000175115 PACS1 / Q6VY07 / phosphofurin acidic cluster sorting protein 1  / complex / reaction
 ENSG00000231389 P20036 / HLA-DPA1 / major histocompatibility complex, class II, DP alpha 1  / complex
 ENSG00000196735 P01909 / HLA-DQA1 / major histocompatibility complex, class II, DQ alpha 1  / complex
 ENSG00000177182 CLVS1 / Q8IUQ0 / clavesin 1  / complex
 ENSG00000019582 CD74 / P04233 / CD74 molecule  / complex
 ENSG00000237541 P01906 / HLA-DQA2 / major histocompatibility complex, class II, DQ alpha 2  / complex
 ENSG00000079805 DNM2 / P50570 / dynamin 2  / complex / reaction
 ENSG00000166710 B2M / P61769 / beta-2-microglobulin  / complex / reaction
 ENSG00000141367 CLTC / Q00610 / clathrin heavy chain  / complex
 ENSG00000204287 P01903 / HLA-DRA / major histocompatibility complex, class II, DR alpha  / complex
 ENSG00000122705 CLTA / P09496 / clathrin light chain A  / complex
 ENSG00000146352 CLVS2 / Q5SYC1 / clavesin 2  / complex






 

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