ENSG00000100749


Homo sapiens

Features
Gene ID: ENSG00000100749
  
Biological name :VRK1
  
Synonyms : Q99986 / vaccinia related kinase 1 / VRK1
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 14
Strand: 1
Band: q32.2
Gene start: 96797304
Gene end: 96931722
  
Corresponding Affymetrix probe sets: 203856_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000216639
Ensembl peptide - ENSP00000450820
Ensembl peptide - ENSP00000451412
Ensembl peptide - ENSP00000451682
NCBI entrez gene - 7443     See in Manteia.
OMIM - 602168
RefSeq - XM_017021626
RefSeq - XM_006720247
RefSeq - XM_011537132
RefSeq - XM_017021622
RefSeq - XM_017021624
RefSeq - XM_017021625
RefSeq - NM_003384
RefSeq Peptide - NP_003375
swissprot - H0YJF7
swissprot - H0YJJ9
swissprot - H0YJ50
swissprot - Q99986
Ensembl - ENSG00000100749
  
Related genetic diseases (OMIM): 607596 - Pontocerebellar hypoplasia type 1A, 607596
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 vrk1ENSDARG00000018006Danio rerio
 VRK1ENSGALG00000011116Gallus gallus
 Vrk1ENSMUSG00000021115Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
VRK2 / Q86Y07 / vaccinia related kinase 2ENSG0000002811648
VRK3 / Q8IV63 / vaccinia related kinase 3ENSG0000010505330
P78368 / CSNK1G2 / casein kinase 1 gamma 2ENSG0000013327526
Q9Y6M4 / CSNK1G3 / casein kinase 1 gamma 3ENSG0000015129225
Q9HCP0 / CSNK1G1 / casein kinase 1 gamma 1ENSG0000016911825


Protein motifs (from Interpro)
Interpro ID Name
 IPR000719  Protein kinase domain
 IPR008271  Serine/threonine-protein kinase, active site
 IPR011009  Protein kinase-like domain superfamily
 IPR017441  Protein kinase, ATP binding site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006468 protein phosphorylation IEA
 biological_processGO:0007049 cell cycle IEA
 biological_processGO:0007077 mitotic nuclear envelope disassembly TAS
 biological_processGO:0007084 mitotic nuclear envelope reassembly TAS
 biological_processGO:0008360 regulation of cell shape IBA
 biological_processGO:0016310 phosphorylation IEA
 biological_processGO:0043987 histone H3-S10 phosphorylation IDA
 biological_processGO:0046777 protein autophosphorylation IEA
 biological_processGO:0051301 cell division IEA
 biological_processGO:0072355 histone H3-T3 phosphorylation IDA
 biological_processGO:0090166 Golgi disassembly IDA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm TAS
 cellular_componentGO:0005730 nucleolus IDA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005795 Golgi stack IDA
 cellular_componentGO:0005819 spindle IEA
 cellular_componentGO:0005829 cytosol TAS
 cellular_componentGO:0005856 cytoskeleton IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0004672 protein kinase activity IEA
 molecular_functionGO:0004674 protein serine/threonine kinase activity TAS
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0005524 ATP binding IEA
 molecular_functionGO:0016301 kinase activity IEA
 molecular_functionGO:0016740 transferase activity IEA
 molecular_functionGO:0019901 protein kinase binding IDA
 molecular_functionGO:0031493 nucleosomal histone binding IPI
 molecular_functionGO:0035175 histone kinase activity (H3-S10 specific) IDA
 molecular_functionGO:0072354 histone kinase activity (H3-T3 specific) IDA


Pathways (from Reactome)
Pathway description
Clearance of Nuclear Envelope Membranes from Chromatin
Initiation of Nuclear Envelope Reformation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
Show

 HP:0001249 Mental retardation 
Show

 HP:0001251 Ataxia "Ataxia is a nonspecific neurological sign and symptom consisting of gross lack of coordination of muscle movements. Ataxia is caused by dysfunction of one or more parts of the nervous system including the cerebellum, the sensory nervous system, the vestibular system, or the cerebral cortex." [HPO:curators]
Show

 HP:0001252 Muscular hypotonia "Muscular hypotonia is an abnormally low muscle tone (the amount of tension or resistance to movement in a muscle), often involving reduced muscle strength. Hypotonia is characterized by a diminished resistance to passive stretching." [HPO:curators]
Show

 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
Show

 HP:0001290 Generalized hypotonia "Generalized muscular hypotonia (abnormally low muscle tone)." [HPO:curators]
Show

 HP:0001321 Cerebellar hypoplasia 
Show

 HP:0001324 Muscle weakness "Reduced strength of muscles." [HPO:curators]
Show

 HP:0001347 Hyperreflexia "The presence of overactive or overresponsive reflexes." [HPO:curators]
Show

 HP:0001760 Abnormality of the feet "An abnormality of the feet (foot deformity) is a disorder of the foot that can either be congenital or acquired. Such deformities can include hammer toe, club foot deformity, flat feet, pes cavus, Congenital vertical talus (rocker bottom foot) & etc." [HPO:curators]
Show

 HP:0002093 Respiratory insufficiency 
Show

 HP:0002380 Fasciculations "Fasciculations are observed as small, local, involuntary muscle contractions (twitching) visible under the skin. Fasciculations result from increased irritability of an axon (which in turn is often a manifestation of disease of a motor neuron). This leads to sporadic discharges of all the muscle fibers controlled by the axon in isolation from other motor units." [HPO:curators]
Show

 HP:0002398 Degeneration of anterior horn cells 
Show

 HP:0002803 Congenital contractures 
Show

 HP:0003445 EMG shows neuropathic changes 
Show

 HP:0003577 Onset at birth 
Show

 HP:0003676 Progressive disorder 
Show

 HP:0006850 Hypoplasia of the ventral pons 
Show

 HP:0006999 Cell loss and gliosis in the basal ganglia 
Show

 HP:0007269 Spinal muscular atrophy "Muscular weakness and atrophy related to loss of the motor neurons of the spinal cord and brainstem." [HPO:curators]
Show

 HP:0008872 Feeding problems in infancy 
Show

 HP:0012110 Hypoplasia of the pons "Underdevelopment of the `pons` (FMA:67943)." [HPO:probinson]
Show

 HP:0200147 Neuronal loss in basal ganglia 
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000176915 ANKLE2 / Q86XL3 / ankyrin repeat and LEM domain containing 2  / reaction / complex
 ENSG00000102119 EMD / emerin / P50402  / reaction
 ENSG00000160789 LMNA / P02545 / lamin A/C  / reaction
 ENSG00000175334 BANF1 / O75531 / barrier to autointegration factor 1  / reaction






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   


© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr