ENSG00000175334


Homo sapiens

Features
Gene ID: ENSG00000175334
  
Biological name :BANF1
  
Synonyms : BANF1 / barrier to autointegration factor 1 / O75531
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 11
Strand: 1
Band: q13.1
Gene start: 66002079
Gene end: 66004149
  
Corresponding Affymetrix probe sets: 210125_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000431785
Ensembl peptide - ENSP00000433760
Ensembl peptide - ENSP00000432867
Ensembl peptide - ENSP00000310275
Ensembl peptide - ENSP00000416128
NCBI entrez gene - 8815     See in Manteia.
OMIM - 603811
RefSeq - XM_017018514
RefSeq - XM_017018515
RefSeq - NM_001143985
RefSeq - NM_003860
RefSeq Peptide - NP_001137457
RefSeq Peptide - NP_003851
swissprot - O75531
swissprot - E9PJJ8
swissprot - A0A024R5H0
Ensembl - ENSG00000175334
  
Related genetic diseases (OMIM): 614008 - Nestor-Guillermo progeria syndrome, 614008
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 banf1ENSDARG00000037009Danio rerio


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
BANF2 / Q9H503 / barrier to autointegration factor 2ENSG0000012588839


Protein motifs (from Interpro)
Interpro ID Name
 IPR004122  Barrier- to-autointegration factor, BAF
 IPR036617  Barrier-to-autointegration factor, BAF superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007077 mitotic nuclear envelope disassembly TAS
 biological_processGO:0007084 mitotic nuclear envelope reassembly TAS
 biological_processGO:0009615 response to virus TAS
 biological_processGO:0016032 viral process IEA
 biological_processGO:0045071 negative regulation of viral genome replication IDA
 biological_processGO:0051169 nuclear transport TAS
 biological_processGO:0075713 establishment of integrated proviral latency TAS
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005635 nuclear envelope IEA
 cellular_componentGO:0005654 nucleoplasm TAS
 cellular_componentGO:0005694 chromosome IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005829 cytosol TAS
 cellular_componentGO:0070062 extracellular exosome HDA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0008022 protein C-terminus binding IMP
 molecular_functionGO:0019899 enzyme binding IPI
 molecular_functionGO:0042802 identical protein binding IPI
 molecular_functionGO:0042803 protein homodimerization activity IPI
 molecular_functionGO:0047485 protein N-terminus binding IPI
 molecular_functionGO:0097726 LEM domain binding IMP


Pathways (from Reactome)
Pathway description
Integration of provirus
2-LTR circle formation
Integration of viral DNA into host genomic DNA
Autointegration results in viral DNA circles
APOBEC3G mediated resistance to HIV-1 infection
Vpr-mediated nuclear import of PICs
Clearance of Nuclear Envelope Membranes from Chromatin
Initiation of Nuclear Envelope Reformation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000272 Malar hypoplasia "Underdeveloped midface region." [HPO:curators]
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 HP:0000347 Mandibular hypoplasia "Underdevelopment of the mandible." [HPO:curators]
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 HP:0000444 Beaked nose 
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 HP:0000520 Proptosis 
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 HP:0000535 Sparse eyebrows 
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 HP:0000653 Sparse eyelashes "Decreased density/number of eyelashes." [pmid:19125427]
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 HP:0000678 Dental overcrowding 
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 HP:0000772 Abnormality of the ribs 
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 HP:0000905 Progressive acroosteolysis of the clavicle 
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 HP:0000939 Osteoporosis "Osteoporosis is a systemic skeletal disease characterized by low bone density and microarchitectural deterioration of bone tissue with a consequent increase in bone fragility. According to the WHO, osteoporosis is characterized by a value of BMD 2.5 standard deviations or more below the young adult mean." [HPO:curators]
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 HP:0001371 Contractures 
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 HP:0001387 Joint stiffness "Joint stiffness is a perceived sensation of tightness in a joint or joints when attempting to move them after a period of inactivity. Joint stiffness typically subsides over time." [HPO:curators]
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 HP:0001476 Delayed closure of the anterior fontanelle "A delay in closure (ossification) of the anterior fontanelle, which generally undergoes closure around the 18th month of life." [HPO:curators]
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 HP:0001508 Failure to thrive 
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 HP:0002092 Pulmonary hypertension 
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 HP:0002621 Atherosclerosis "A condition characterized by patchy atheromas or atherosclerotic plaques which develop in the walls of medium-sized and large arteries and can lead to arterial stenosis with reduced or blocked blood flow." [HPO:curators]
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 HP:0002650 Scoliosis "The presence of an abnormal lateral curvature of the spine." [HPO:curators]
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 HP:0002973 Abnormality of the forearm "An abnormality of the lower arm." [HPO:curators]
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 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
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 HP:0005585 Spotty hyperpigmentation 
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 HP:0009839 Osteolytic defects of the distal phalanges of the hand 
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 HP:0010537 Wide cranial sutures "An abnormally increased width of the cranial sutures." [HPO:curators]
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 HP:0011703 Sinus tachycardia "Inappropriate sinus tachycardia is a nonparoxysmal tachyarrhythmia characterized by an increased resting heart rate (HR) and/or an exaggerated HR response to minimal exertion or a change in body posture. HR is constantly above the physiological range with no appropriate relation to metabolic or physiological demands." [HPO:probinson, pmid:15763524]
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 HP:0011712 Right bundle branch block "A conduction block of the right branch of the bundle of His. This manifests as a prolongation of the QRS complex (greater than 0.12 s) with delayed activation of the right ventricle and terminal delay on the EKG." [DDD:dbrown, HPO:probinson]
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 HP:0011800 Midface retrusion "Posterior positions and/or vertical shortening of the infraorbital and perialar regions, or increased concavity of the face and/or reduced nasolabial angle." [DDD:jclayton-smith]
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 HP:0100578 Lipoatrophy "Localized loss of fat tissue." [HPO:sdoelken]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000100749 VRK1 / Q99986 / vaccinia related kinase 1  / reaction
 ENSG00000113575 P67775 / PPP2CA / protein phosphatase 2 catalytic subunit alpha  / reaction
 ENSG00000164985 PSIP1 / O75475 / PC4 and SFRS1 interacting protein 1  / reaction / complex
 ENSG00000102119 EMD / emerin / P50402  / complex / reaction
 ENSG00000175334 BANF1 / O75531 / barrier to autointegration factor 1  / complex
 ENSG00000137309 HMGA1 / P17096 / high mobility group AT-hook 1  / complex / reaction
 ENSG00000105568 P30153 / PPP2R1A / protein phosphatase 2 scaffold subunit Aalpha  / reaction
 ENSG00000221914 P63151 / PPP2R2A / protein phosphatase 2 regulatory subunit Balpha  / reaction
 ENSG00000160789 LMNA / P02545 / lamin A/C  / complex / reaction






 

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