ENSG00000101400


Homo sapiens

Features
Gene ID: ENSG00000101400
  
Biological name :SNTA1
  
Synonyms : Q13424 / SNTA1 / syntrophin alpha 1
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 20
Strand: -1
Band: q11.21
Gene start: 33407955
Gene end: 33443892
  
Corresponding Affymetrix probe sets: 203516_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000217381
NCBI entrez gene - 6640     See in Manteia.
OMIM - 601017
RefSeq - XM_011529008
RefSeq - NM_003098
RefSeq - XM_005260517
RefSeq - XM_011529007
RefSeq Peptide - NP_003089
swissprot - Q13424
Ensembl - ENSG00000101400
  
Related genetic diseases (OMIM): 612955 - Long QT syndrome 12, 612955
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SNTA1ENSDARG00000098420Danio rerio
 SNTA1ENSGALG00000029694Gallus gallus
 Snta1ENSMUSG00000027488Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
SNTB1 / Q13884 / syntrophin beta 1ENSG0000017216452
SNTB2 / Q13425 / syntrophin beta 2ENSG0000016880748
SNTG2 / Q9NY99 / syntrophin gamma 2ENSG0000017255427
SNTG1 / Q9NSN8 / syntrophin gamma 1ENSG0000014748125
GOPC / Q9HD26 / golgi associated PDZ and coiled-coil motif containingENSG0000004793215
AL132671.2ENSG0000028221811
LIN7A / O14910 / lin-7 homolog A, crumbs cell polarity complex componentENSG0000011105210
LIN7B / Q9HAP6 / lin-7 homolog B, crumbs cell polarity complex componentENSG0000010486310
LIN7C / Q9NUP9 / lin-7 homolog C, crumbs cell polarity complex componentENSG000001489439


Protein motifs (from Interpro)
Interpro ID Name
 IPR001478  PDZ domain
 IPR001849  Pleckstrin homology domain
 IPR011993  PH-like domain superfamily
 IPR015482  Syntrophin
 IPR028552  Alpha-1-syntrophin
 IPR036034  PDZ superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0002027 regulation of heart rate IMP
 biological_processGO:0006936 muscle contraction TAS
 biological_processGO:0060307 regulation of ventricular cardiac muscle cell membrane repolarization IMP
 biological_processGO:0065009 regulation of molecular function IEA
 biological_processGO:0086005 ventricular cardiac muscle cell action potential IMP
 biological_processGO:1902083 negative regulation of peptidyl-cysteine S-nitrosylation IMP
 biological_processGO:1902305 regulation of sodium ion transmembrane transport IMP
 cellular_componentGO:0005622 intracellular IDA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005856 cytoskeleton IEA
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0016013 syntrophin complex TAS
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016328 lateral plasma membrane TAS
 cellular_componentGO:0030054 cell junction IEA
 cellular_componentGO:0031594 neuromuscular junction IEA
 cellular_componentGO:0032991 protein-containing complex IDA
 cellular_componentGO:0042383 sarcolemma IEA
 molecular_functionGO:0003779 actin binding IEA
 molecular_functionGO:0005198 structural molecule activity IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0005516 calmodulin binding IEA
 molecular_functionGO:0017080 sodium channel regulator activity IMP
 molecular_functionGO:0030165 PDZ domain binding IEA
 molecular_functionGO:0044325 ion channel binding IPI
 molecular_functionGO:0050998 nitric-oxide synthase binding IPI
 molecular_functionGO:0051117 ATPase binding IPI


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0001279 Syncope "Syncope refers to a generalized weakness of muscles with loss of postural tone, inability to stand upright, and loss of consciousness. Once the patient is in a horizontal position, blood flow to the brain is no longer hindered by gravitation and consciousness is regained. Unconsciousness usually lasts for seconds to minutes. Headache and drowsiness (which usually follow seizures) do not follow a syncopal attack. Syncope results from a sudden impairment of brain metabolism usually due to a reduction in cerebral blood flow. This term refers to an abnormally increased disposition to syncope." [HPO:curators]
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 HP:0001663 Ventricular fibrillation 
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 HP:0001664 Torsade de pointes 
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 HP:0005184 Prolonged QTc interval 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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