ENSG00000172164


Homo sapiens

Features
Gene ID: ENSG00000172164
  
Biological name :SNTB1
  
Synonyms : Q13884 / SNTB1 / syntrophin beta 1
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 8
Strand: -1
Band: q24.12
Gene start: 120535745
Gene end: 120813273
  
Corresponding Affymetrix probe sets: 208608_s_at (Human Genome U133 Plus 2.0 Array)   214708_at (Human Genome U133 Plus 2.0 Array)   215431_at (Human Genome U133 Plus 2.0 Array)   226438_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000429292
Ensembl peptide - ENSP00000431124
Ensembl peptide - ENSP00000378965
NCBI entrez gene - 6641     See in Manteia.
OMIM - 600026
RefSeq - NM_021021
RefSeq Peptide - NP_066301
swissprot - E5RIX7
swissprot - Q13884
Ensembl - ENSG00000172164
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 sntb1ENSDARG00000041729Danio rerio
 SNTB1ENSGALG00000034528Gallus gallus
 Sntb1ENSMUSG00000060429Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
SNTB2 / Q13425 / syntrophin beta 2ENSG0000016880756
SNTA1 / Q13424 / syntrophin alpha 1ENSG0000010140049
SNTG2 / Q9NY99 / syntrophin gamma 2ENSG0000017255423
SNTG1 / Q9NSN8 / syntrophin gamma 1ENSG0000014748122
GOPC / Q9HD26 / golgi associated PDZ and coiled-coil motif containingENSG0000004793215
AL132671.2ENSG0000028221812
LIN7A / O14910 / lin-7 homolog A, crumbs cell polarity complex componentENSG0000011105211
LIN7B / Q9HAP6 / lin-7 homolog B, crumbs cell polarity complex componentENSG0000010486311
LIN7C / Q9NUP9 / lin-7 homolog C, crumbs cell polarity complex componentENSG0000014894310


Protein motifs (from Interpro)
Interpro ID Name
 IPR001478  PDZ domain
 IPR001849  Pleckstrin homology domain
 IPR011993  PH-like domain superfamily
 IPR015482  Syntrophin
 IPR036034  PDZ superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006936 muscle contraction TAS
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005856 cytoskeleton IEA
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0005925 focal adhesion HDA
 cellular_componentGO:0016010 dystrophin-associated glycoprotein complex TAS
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0030054 cell junction IEA
 cellular_componentGO:0032991 protein-containing complex IDA
 cellular_componentGO:0042383 sarcolemma IEA
 cellular_componentGO:0045202 synapse IEA
 molecular_functionGO:0003779 actin binding IEA
 molecular_functionGO:0005198 structural molecule activity IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0005516 calmodulin binding IEA
 molecular_functionGO:0030165 PDZ domain binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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