ENSG00000172554


Homo sapiens

Features
Gene ID: ENSG00000172554
  
Biological name :SNTG2
  
Synonyms : Q9NY99 / SNTG2 / syntrophin gamma 2
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 2
Strand: 1
Band: p25.3
Gene start: 950868
Gene end: 1367613
  
Corresponding Affymetrix probe sets: 1570422_at (Human Genome U133 Plus 2.0 Array)   220487_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000311837
Ensembl peptide - ENSP00000385020
Ensembl peptide - ENSP00000401997
Ensembl peptide - ENSP00000412249
NCBI entrez gene - 54221     See in Manteia.
OMIM - 608715
RefSeq - XM_017004373
RefSeq - NM_018968
RefSeq - XM_017004365
RefSeq - XM_017004366
RefSeq - XM_017004367
RefSeq - XM_011510366
RefSeq - XM_017004361
RefSeq - XM_017004362
RefSeq - XM_017004363
RefSeq - XM_017004364
RefSeq Peptide - NP_061841
swissprot - Q9NY99
swissprot - F2Z2D2
Ensembl - ENSG00000172554
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 sntg2ENSDARG00000101660Danio rerio
 SNTG2ENSGALG00000016367Gallus gallus
 Sntg2ENSMUSG00000020672Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
SNTG1 / Q9NSN8 / syntrophin gamma 1ENSG0000014748148
SNTA1 / Q13424 / syntrophin alpha 1ENSG0000010140025
SNTB2 / Q13425 / syntrophin beta 2ENSG0000016880723
SNTB1 / Q13884 / syntrophin beta 1ENSG0000017216423
GOPC / Q9HD26 / golgi associated PDZ and coiled-coil motif containingENSG0000004793213
AL132671.2ENSG0000028221811
LIN7A / O14910 / lin-7 homolog A, crumbs cell polarity complex componentENSG0000011105210
LIN7C / Q9NUP9 / lin-7 homolog C, crumbs cell polarity complex componentENSG000001489439
LIN7B / Q9HAP6 / lin-7 homolog B, crumbs cell polarity complex componentENSG000001048639


Protein motifs (from Interpro)
Interpro ID Name
 IPR001478  PDZ domain
 IPR001849  Pleckstrin homology domain
 IPR011993  PH-like domain superfamily
 IPR015482  Syntrophin
 IPR036034  PDZ superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007417 central nervous system development TAS
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005856 cytoskeleton IEA
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0016013 syntrophin complex TAS
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0042383 sarcolemma IEA
 molecular_functionGO:0003779 actin binding IEA
 molecular_functionGO:0005198 structural molecule activity IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0030165 PDZ domain binding IPI
 molecular_functionGO:0097109 neuroligin family protein binding IPI


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr