ENSG00000104938


Homo sapiens

Features
Gene ID: ENSG00000104938
  
Biological name :CLEC4M
  
Synonyms : CLEC4M / C-type lectin domain family 4 member M / Q9H2X3
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 19
Strand: 1
Band: p13.2
Gene start: 7763149
Gene end: 7769605
  
Corresponding Affymetrix probe sets: 207995_s_at (Human Genome U133 Plus 2.0 Array)   210481_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000471125
Ensembl peptide - ENSP00000470286
Ensembl peptide - ENSP00000471132
Ensembl peptide - ENSP00000248228
Ensembl peptide - ENSP00000316228
Ensembl peptide - ENSP00000335228
Ensembl peptide - ENSP00000351954
Ensembl peptide - ENSP00000377680
Ensembl peptide - ENSP00000470132
Ensembl peptide - ENSP00000470137
NCBI entrez gene - 10332     See in Manteia.
OMIM - 605872
RefSeq - XM_006722615
RefSeq - NM_001144904
RefSeq - NM_001144905
RefSeq - NM_001144906
RefSeq - NM_001144907
RefSeq - NM_001144908
RefSeq - NM_001144909
RefSeq - NM_001144910
RefSeq - NM_001144911
RefSeq - NM_014257
RefSeq - XM_006722611
RefSeq - XM_006722612
RefSeq - XM_006722613
RefSeq - XM_006722614
RefSeq Peptide - NP_001138376
RefSeq Peptide - NP_001138381
RefSeq Peptide - NP_001138382
RefSeq Peptide - NP_001138383
RefSeq Peptide - NP_055072
RefSeq Peptide - NP_001138377
RefSeq Peptide - NP_001138378
RefSeq Peptide - NP_001138379
RefSeq Peptide - NP_001138380
swissprot - H7BXU4
swissprot - M0QYX2
swissprot - M0QZ42
swissprot - E7ENS9
swissprot - Q9H2X3
Ensembl - ENSG00000104938
  
Related genetic diseases (OMIM): 605872 - SARS infection, protection against
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 zgc:174904ENSDARG00000059049Danio rerio
 Cd209aENSMUSG00000031494Mus musculus
 Cd209bENSMUSG00000065987Mus musculus
 Cd209cENSMUSG00000040165Mus musculus
 Cd209dENSMUSG00000031495Mus musculus
 Cd209eENSMUSG00000040197Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
CD209 / Q9NNX6 / CD209 moleculeENSG0000009065967
Q8IUN9 / CLEC10A / C-type lectin domain containing 10AENSG0000013251419
CLEC4G / Q6UXB4 / C-type lectin domain family 4 member GENSG0000018256618
ASGR2 / P07307 / asialoglycoprotein receptor 2ENSG0000016194418
Q6ZS10 / CLEC17A / C-type lectin domain containing 17AENSG0000018791217
ASGR1 / P07306 / asialoglycoprotein receptor 1ENSG0000014150517
CLEC4E / Q9ULY5 / C-type lectin domain family 4 member EENSG0000016652317
FCER2 / P06734 / Fc fragment of IgE receptor IIENSG0000010492116
CD207 / Q9UJ71 / CD207 moleculeENSG0000011603113
CLEC4F / Q8N1N0 / C-type lectin domain family 4 member FENSG0000015267213


Protein motifs (from Interpro)
Interpro ID Name
 IPR001304  C-type lectin-like
 IPR016186  C-type lectin-like/link domain superfamily
 IPR016187  C-type lectin fold
 IPR018378  C-type lectin, conserved site
 IPR023129  MTH889-like domain superfamily
 IPR023378  YheA/YmcA-like domain superfamily
 IPR033989  CD209-like, C-type lectin-like domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0002250 adaptive immune response IEA
 biological_processGO:0002376 immune system process IEA
 biological_processGO:0006897 endocytosis IEA
 biological_processGO:0007159 leukocyte cell-cell adhesion NAS
 biological_processGO:0009988 cell-cell recognition TAS
 biological_processGO:0016032 viral process IEA
 biological_processGO:0019048 modulation by virus of host morphology or physiology TAS
 biological_processGO:0019062 virion attachment to host cell TAS
 biological_processGO:0019079 viral genome replication NAS
 biological_processGO:0019882 antigen processing and presentation NAS
 biological_processGO:0035556 intracellular signal transduction NAS
 biological_processGO:0045087 innate immune response IEA
 biological_processGO:0046718 viral entry into host cell IEA
 biological_processGO:0046968 peptide antigen transport NAS
 biological_processGO:0075733 intracellular transport of virus TAS
 cellular_componentGO:0005576 extracellular region IEA
 cellular_componentGO:0005737 cytoplasm NAS
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0005887 integral component of plasma membrane TAS
 cellular_componentGO:0016020 membrane TAS
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0043657 host cell IEA
 molecular_functionGO:0001618 virus receptor activity IMP
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0005537 mannose binding IEA
 molecular_functionGO:0030246 carbohydrate binding NAS
 molecular_functionGO:0030369 ICAM-3 receptor activity NAS
 molecular_functionGO:0042605 peptide antigen binding NAS
 molecular_functionGO:0046790 virion binding TAS
 molecular_functionGO:0046872 metal ion binding IEA
 molecular_functionGO:0048306 calcium-dependent protein binding IPI


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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