ENSG00000119537


Homo sapiens

Features
Gene ID: ENSG00000119537
  
Biological name :KDSR
  
Synonyms : 3-ketodihydrosphingosine reductase / KDSR / Q06136
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 18
Strand: -1
Band: q21.33
Gene start: 63327726
Gene end: 63367510
  
Corresponding Affymetrix probe sets: 1558279_a_at (Human Genome U133 Plus 2.0 Array)   202419_at (Human Genome U133 Plus 2.0 Array)   222359_x_at (Human Genome U133 Plus 2.0 Array)   229850_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000494352
Ensembl peptide - ENSP00000494878
Ensembl peptide - ENSP00000496260
Ensembl peptide - ENSP00000312939
Ensembl peptide - ENSP00000385083
Ensembl peptide - ENSP00000467962
Ensembl peptide - ENSP00000468203
NCBI entrez gene - 2531     See in Manteia.
OMIM - 136440
RefSeq - NM_002035
RefSeq - XM_017025690
RefSeq - XM_005266677
RefSeq Peptide - NP_002026
swissprot - A0A024R292
swissprot - Q06136
swissprot - K7ERC8
swissprot - K7EQS7
Ensembl - ENSG00000119537
  
Related genetic diseases (OMIM): 617526 - Erythrokeratodermia variabilis et progressiva 4, 617526
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 kdsrENSDARG00000012021Danio rerio
 KDSRENSGALG00000012882Gallus gallus
 KdsrENSMUSG00000009905Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
DHRS7 / Q9Y394 / dehydrogenase/reductase 7ENSG0000010061223
DHRS7B / Q6IAN0 / dehydrogenase/reductase 7BENSG0000010901622
RDH8 / retinol dehydrogenase 8 (all-trans)ENSG0000008051120
A6NNS2 / DHRS7C / dehydrogenase/reductase 7CENSG0000018454420
P14061 / HSD17B1 / hydroxysteroid 17-beta dehydrogenase 1ENSG0000010878618
P80365 / HSD11B2 / hydroxysteroid 11-beta dehydrogenase 2ENSG0000017638717
RDH16 / O75452 / retinol dehydrogenase 16 (all-trans)ENSG0000013954716
O14756 / HSD17B6 / hydroxysteroid 17-beta dehydrogenase 6ENSG0000002542316
BDH1 / Q02338 / 3-hydroxybutyrate dehydrogenase 1ENSG0000016126715
Q8NEX9 / SDR9C7 / short chain dehydrogenase/reductase family 9C member 7ENSG0000017042615
RDH5 / Q92781 / retinol dehydrogenase 5ENSG0000013543715
DHRS9 / Q9BPW9 / dehydrogenase/reductase 9ENSG0000007373714
P37059 / HSD17B2 / hydroxysteroid 17-beta dehydrogenase 2ENSG0000008669614


Protein motifs (from Interpro)
Interpro ID Name
 IPR002347  Short-chain dehydrogenase/reductase SDR
 IPR020904  Short-chain dehydrogenase/reductase, conserved site
 IPR036291  NAD(P)-binding domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006629 lipid metabolic process IEA
 biological_processGO:0006665 sphingolipid metabolic process IEA
 biological_processGO:0006666 3-keto-sphinganine metabolic process IDA
 biological_processGO:0030148 sphingolipid biosynthetic process TAS
 biological_processGO:0055114 oxidation-reduction process IEA
 cellular_componentGO:0005615 extracellular space TAS
 cellular_componentGO:0005783 endoplasmic reticulum IDA
 cellular_componentGO:0005789 endoplasmic reticulum membrane TAS
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0016491 oxidoreductase activity IEA
 molecular_functionGO:0047560 3-dehydrosphinganine reductase activity TAS


Pathways (from Reactome)
Pathway description
Sphingolipid de novo biosynthesis


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
Show

 HP:0000035 Abnormality of the testis 
Show

 HP:0000252 Microcephaly "Microcephaly is a neurodevelopmental disorder in which the circumference of the head is more than two standard deviations smaller than the age- and gender-dependent norm." [HPO:curators]
Show

 HP:0000365 Hearing loss 
Show

 HP:0000411 Protruding ears 
Show

 HP:0000501 Glaucoma "Glaucoma refers loss of retinal ganglion cells in a characteristic pattern of optic neuropathy usually associated with increased intraocular pressure." [HPO:curators]
Show

 HP:0000518 Cataract "A cataract is an opacity or clouding that develops in the crystalline `lens` (FMA:58241) of the eye or in its `capsule` (FMA:58881)." [HPO:probinson]
Show

 HP:0000819 Diabetes mellitus 
Show

 HP:0000958 Dry skin 
Show

 HP:0000982 Palmoplantar keratoderma 
Show

 HP:0000988 Skin rash 
Show

 HP:0000992 Photosensitivity "An increased sensitivity of the skin to light. Photosensitivity may result in a rash upon exposure to the sun (which is known as photodermatosis). Photosensitivity can be diagnosed by phototests in which light is shone on small areas of skin." [HPO:curators]
Show

 HP:0001034 Hyperpigmented macules 
Show

 HP:0001156 Brachydactyly 
Show

 HP:0001182 Tapered fingers 
Show

 HP:0001249 Mental retardation 
Show

 HP:0001596 Alopecia "Loss of hair from the head or body." [HPO:curators]
Show

 HP:0001597 Abnormality of the nails "Abnormality of the fingernails or toenails." [HPO:curators]
Show

 HP:0001824 Weight loss 
Show

 HP:0002230 Generalized hirsutism "Abnormally increased hair growth over much of the entire body." [HPO:curators]
Show

 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
Show

 HP:0005588 Palmoplantar keratoderma, patchy 
Show

 HP:0007957 Variable degree of corneal opacities 
Show

 HP:0008066 Abnormal blistering of the skin 
Show

 HP:0008069 Neoplasia of the skin 
Show

 HP:0010783 Erythema "Redness of the skin, caused by hyperemia of the capillaries in the lower layers of the skin." [HPO:probinson]
Show

 HP:0025092 Epidermal acanthosis "Diffuse hypertrophy or thickening of the stratum spinosum of the epidermis (prickle cell layer of the skin)." []
Show

 HP:0030680 Abnormality of cardiovascular system morphology "Any structural anomaly of the heart and great vessels." []
Show

 HP:0200035 skin plaques "A broad papule, or confluence of papules equal to or greater than 10 mm. Has also been defined as an elevated, plateau-like lesion that is greater in its diameter than in its depth." [HPO:SKOEHLER]
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   


© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr