ENSG00000124177


Homo sapiens

Features
Gene ID: ENSG00000124177
  
Biological name :CHD6
  
Synonyms : CHD6 / chromodomain helicase DNA binding protein 6 / Q8TD26
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 20
Strand: -1
Band: q12
Gene start: 41402101
Gene end: 41618494
  
Corresponding Affymetrix probe sets: 1555463_a_at (Human Genome U133 Plus 2.0 Array)   225026_at (Human Genome U133 Plus 2.0 Array)   225031_at (Human Genome U133 Plus 2.0 Array)   234681_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000404637
Ensembl peptide - ENSP00000362319
Ensembl peptide - ENSP00000362330
Ensembl peptide - ENSP00000392503
Ensembl peptide - ENSP00000308684
NCBI entrez gene - 84181     See in Manteia.
OMIM - 616114
RefSeq - XM_017028104
RefSeq - XM_017028099
RefSeq - XM_017028100
RefSeq - XM_017028101
RefSeq - XM_017028102
RefSeq - XM_017028103
RefSeq - NM_032221
RefSeq - XM_005260573
RefSeq - XM_011529080
RefSeq - XM_011529082
RefSeq Peptide - NP_115597
swissprot - C9JFU2
swissprot - H7C294
swissprot - A0A075B6P4
swissprot - Q8TD26
Ensembl - ENSG00000124177
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 chd6ENSDARG00000017244Danio rerio
 ENSGALG00000032417Gallus gallus
 Chd6ENSMUSG00000057133Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
CHD7 / Q9P2D1 / chromodomain helicase DNA binding protein 7ENSG0000017131646
CHD9 / Q3L8U1 / chromodomain helicase DNA binding protein 9ENSG0000017720044
CHD8 / Q9HCK8 / chromodomain helicase DNA binding protein 8ENSG0000010088840
CHD5 / Q8TDI0 / chromodomain helicase DNA binding protein 5ENSG0000011625418
CHD3 / Q12873 / chromodomain helicase DNA binding protein 3ENSG0000017000418
CHD4 / Q14839 / chromodomain helicase DNA binding protein 4ENSG0000011164217
CHD1 / O14646 / chromodomain helicase DNA binding protein 1ENSG0000015392216
CHD2 / O14647 / chromodomain helicase DNA binding protein 2ENSG0000017357516
AC013394.1ENSG000002797650


Protein motifs (from Interpro)
Interpro ID Name
 IPR000330  SNF2-related, N-terminal domain
 IPR000953  Chromo/chromo shadow domain
 IPR001650  Helicase, C-terminal
 IPR002464  DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site
 IPR006576  BRK domain
 IPR014001  Helicase superfamily 1/2, ATP-binding domain
 IPR016197  Chromo-like domain superfamily
 IPR023780  Chromo domain
 IPR027417  P-loop containing nucleoside triphosphate hydrolase
 IPR037259  BRK domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006325 chromatin organization IEA
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0016032 viral process IEA
 biological_processGO:0036091 positive regulation of transcription from RNA polymerase II promoter in response to oxidative stress IMP
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0005665 DNA-directed RNA polymerase II, core complex IDA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0001221 transcription cofactor binding IPI
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0004386 helicase activity IEA
 molecular_functionGO:0005515 protein binding IEA
 molecular_functionGO:0005524 ATP binding IEA
 molecular_functionGO:0008094 DNA-dependent ATPase activity IDA
 molecular_functionGO:0016787 hydrolase activity IEA
 molecular_functionGO:0016817 hydrolase activity, acting on acid anhydrides IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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