ENSDARG00000017244


Danio rerio

Features
Gene ID: ENSDARG00000017244
  
Biological name :chd6
  
Synonyms : chd6 / chromodomain helicase DNA binding protein 6
  
Possible biological names infered from orthology : A3KFM7 / Q8TD26
  
Species: Danio rerio
  
Chr. number: 6
Strand: -1
Band:
Gene start: 51575924
Gene end: 51666739
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000032370
Ensembl peptide - ENSDARP00000128062
NCBI entrez gene - 570753     See in Manteia.
RefSeq - XM_009302700
RefSeq - XM_009302703
RefSeq - XM_021477302
RefSeq - XM_694268
RefSeq - XM_009302702
swissprot - X1WCW5
swissprot - F1QYR7
ZFIN ID - ZDB-GENE-130530-559
Ensembl - ENSDARG00000017244
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ENSGALG00000032417Gallus gallus
 CHD6ENSG00000124177Homo sapiens
 Chd6ENSMUSG00000057133Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
chd7 / chromodomain helicase DNA binding protein 7 / A2AJK6* / Q9P2D1*ENSDARG0000007521142
chd9 / chromodomain helicase DNA binding protein 9 / Q3L8U1* / Q8BYH8*ENSDARG0000007449838
chd8 / chromodomain helicase DNA binding protein 8 / Q09XV5* / Q9HCK8*ENSDARG0000007554332
chd4b / chromodomain helicase DNA binding protein 4b / CHD4* / Q14839* / Q6PDQ2* / chromodomain helicase DNA binding protein 4* / Mus musculus chromodomain helicase DNA binding protein 4 (C...ENSDARG0000002578915
chd4a / chromodomain helicase DNA binding protein 4a / CHD4* / Q14839* / Q6PDQ2* / chromodomain helicase DNA binding protein 4* / Mus musculus chromodomain helicase DNA binding protein 4 (C...ENSDARG0000006353515
chd3 / chromodomain helicase DNA binding protein 3 / Q12873*ENSDARG0000002140515
chd5 / chromodomain helicase DNA binding protein 5 / A2A8L1* / Q8TDI0*ENSDARG0000010508315
chd2 / chromodomain helicase DNA binding protein 2 / E9PZM4* / O14647* / AC013394.1*ENSDARG0000006068714
chd1 / chromodomain helicase DNA binding protein 1 / O14646* / P40201* / Q9CQS5*ENSDARG0000010378714


Protein motifs (from Interpro)
Interpro ID Name
 IPR000330  SNF2-related, N-terminal domain
 IPR000953  Chromo/chromo shadow domain
 IPR001650  Helicase, C-terminal
 IPR006576  BRK domain
 IPR014001  Helicase superfamily 1/2, ATP-binding domain
 IPR016197  Chromo-like domain superfamily
 IPR023780  Chromo domain
 IPR027417  P-loop containing nucleoside triphosphate hydrolase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0005524 ATP binding IEA
 molecular_functionGO:0016817 hydrolase activity, acting on acid anhydrides IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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