ENSDARG00000021405
Danio rerio | |
Features
| Gene ID: | ENSDARG00000021405 | | | | | Biological name : | chd3 | | | | | Synonyms : | chd3 / chromodomain helicase DNA binding protein 3 | | | | | Possible biological names infered from orthology : | Q12873 | | | | | Species: | Danio rerio | | | | | Chr. number: | 7 | | Strand: | -1 | | Band: | | | Gene start: | 20673287 | | Gene end: | 20758828 | | | | | Corresponding Affymetrix probe sets: | | | | | | Cross references: | Ensembl peptide - ENSDARP00000127601
Ensembl peptide - ENSDARP00000147575
Ensembl peptide - ENSDARP00000148227
Ensembl peptide - ENSDARP00000150089
Ensembl peptide - ENSDARP00000155121
swissprot - X1WBL0
ZFIN ID - ZDB-GENE-121031-4
Ensembl - ENSDARG00000021405
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See co-cited genes in PubMed
Ortholog prediction (from Ensembl)
Paralog prediction (from Ensembl)
| chd5 / chromodomain helicase DNA binding protein 5 / A2A8L1* / Q8TDI0* | ENSDARG00000105083 | 71 | | chd4b / chromodomain helicase DNA binding protein 4b / CHD4* / Q14839* / Q6PDQ2* / chromodomain helicase DNA binding protein 4* / Mus musculus chromodomain helicase DNA binding protein 4 (C... | ENSDARG00000025789 | 67 | | chd4a / chromodomain helicase DNA binding protein 4a / CHD4* / Q14839* / Q6PDQ2* / chromodomain helicase DNA binding protein 4* / Mus musculus chromodomain helicase DNA binding protein 4 (C... | ENSDARG00000063535 | 67 | | chd7 / chromodomain helicase DNA binding protein 7 / A2AJK6* / Q9P2D1* | ENSDARG00000075211 | 26 | | chd2 / chromodomain helicase DNA binding protein 2 / E9PZM4* / O14647* / AC013394.1* | ENSDARG00000060687 | 24 | | chd6 / chromodomain helicase DNA binding protein 6 / Q8TD26* | ENSDARG00000017244 | 24 | | chd9 / chromodomain helicase DNA binding protein 9 / Q3L8U1* / Q8BYH8* | ENSDARG00000074498 | 24 | | chd1 / chromodomain helicase DNA binding protein 1 / O14646* / P40201* / Q9CQS5* | ENSDARG00000103787 | 24 | | chd8 / chromodomain helicase DNA binding protein 8 / Q09XV5* / Q9HCK8* | ENSDARG00000075543 | 23 |
Protein motifs (from Interpro)
| IPR000330 | SNF2-related, N-terminal domain | | IPR000953 | Chromo/chromo shadow domain | | IPR001650 | Helicase, C-terminal | | IPR001965 | Zinc finger, PHD-type | | IPR002464 | DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site | | IPR009071 | High mobility group box domain | | IPR009462 | Domain of unknown function DUF1086 | | IPR009463 | Domain of unknown function DUF1087 | | IPR011011 | Zinc finger, FYVE/PHD-type | | IPR012957 | CHD, C-terminal 2 | | IPR012958 | CHD, N-terminal | | IPR013083 | Zinc finger, RING/FYVE/PHD-type | | IPR014001 | Helicase superfamily 1/2, ATP-binding domain | | IPR016197 | Chromo-like domain superfamily | | IPR019786 | Zinc finger, PHD-type, conserved site | | IPR019787 | Zinc finger, PHD-finger | | IPR023780 | Chromo domain | | IPR027417 | P-loop containing nucleoside triphosphate hydrolase | | IPR028722 | Chromodomain-helicase-DNA-binding protein 3 |
Gene Ontology (GO)
Pathways (from Reactome)
Phenotype (from MGI, Zfin or HPO)
| ZFA:0000008 | brain | brain edematous , abnormal |
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| | ZFA:0000012 | central nervous system | central nervous system decreased thickness , abnormal |
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| | ZFA:0000114 | heart | heart morphology , abnormal |
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| | ZFA:0001094 | whole organism | whole organism decreased size , abnormal |
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| | ZFA:0001114 | head | head morphology , abnormal |
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Interacting proteins (from Reactome)
| ENSDARG00000044267 | sumo1 / Q7SZR5 / small ubiquitin-like modifier 1 / P63166* / P63165* / Small ubiquitin-related modifier 1 * | / complex |
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