ENSDARG00000105083
Danio rerio | |
Features
| Gene ID: | ENSDARG00000105083 | | | | | Biological name : | chd5 | | | | | Synonyms : | chd5 / chromodomain helicase DNA binding protein 5 | | | | | Possible biological names infered from orthology : | A2A8L1 / Q8TDI0 | | | | | Species: | Danio rerio | | | | | Chr. number: | 11 | | Strand: | -1 | | Band: | | | Gene start: | 29574743 | | Gene end: | 29650930 | | | | | Corresponding Affymetrix probe sets: | Dr.17757.1.A1_at (Zebrafish Array) | | | | | Cross references: | Ensembl peptide - ENSDARP00000135126
Ensembl peptide - ENSDARP00000133704
Ensembl peptide - ENSDARP00000152266
Ensembl peptide - ENSDARP00000154248
swissprot - A0A0R4IM65
swissprot - A0A0R4IJ89
ZFIN ID - ZDB-GENE-120314-2
Ensembl - ENSDARG00000105083
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See co-cited genes in PubMed
Ortholog prediction (from Ensembl)
Paralog prediction (from Ensembl)
| chd3 / chromodomain helicase DNA binding protein 3 / Q12873* | ENSDARG00000021405 | 65 | | chd4a / chromodomain helicase DNA binding protein 4a / CHD4* / Q14839* / Q6PDQ2* / chromodomain helicase DNA binding protein 4* / Mus musculus chromodomain helicase DNA binding protein 4 (C... | ENSDARG00000063535 | 65 | | chd4b / chromodomain helicase DNA binding protein 4b / CHD4* / Q14839* / Q6PDQ2* / chromodomain helicase DNA binding protein 4* / Mus musculus chromodomain helicase DNA binding protein 4 (C... | ENSDARG00000025789 | 64 | | chd7 / chromodomain helicase DNA binding protein 7 / A2AJK6* / Q9P2D1* | ENSDARG00000075211 | 25 | | chd2 / chromodomain helicase DNA binding protein 2 / E9PZM4* / O14647* / AC013394.1* | ENSDARG00000060687 | 25 | | chd1 / chromodomain helicase DNA binding protein 1 / O14646* / P40201* / Q9CQS5* | ENSDARG00000103787 | 24 | | chd6 / chromodomain helicase DNA binding protein 6 / Q8TD26* | ENSDARG00000017244 | 23 | | chd9 / chromodomain helicase DNA binding protein 9 / Q3L8U1* / Q8BYH8* | ENSDARG00000074498 | 22 | | chd8 / chromodomain helicase DNA binding protein 8 / Q09XV5* / Q9HCK8* | ENSDARG00000075543 | 22 |
Protein motifs (from Interpro)
| IPR000330 | SNF2-related, N-terminal domain | | IPR000953 | Chromo/chromo shadow domain | | IPR001650 | Helicase, C-terminal | | IPR001965 | Zinc finger, PHD-type | | IPR002464 | DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site | | IPR009071 | High mobility group box domain | | IPR009462 | Domain of unknown function DUF1086 | | IPR009463 | Domain of unknown function DUF1087 | | IPR011011 | Zinc finger, FYVE/PHD-type | | IPR012957 | CHD, C-terminal 2 | | IPR012958 | CHD, N-terminal | | IPR013083 | Zinc finger, RING/FYVE/PHD-type | | IPR014001 | Helicase superfamily 1/2, ATP-binding domain | | IPR016197 | Chromo-like domain superfamily | | IPR019786 | Zinc finger, PHD-type, conserved site | | IPR019787 | Zinc finger, PHD-finger | | IPR023780 | Chromo domain | | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
Gene Ontology (GO)
Pathways (from Reactome)
No match
Phenotype (from MGI, Zfin or HPO)
| ZFA:0000029 | hindbrain | hindbrain decreased amount , abnormal |
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| | ZFA:0000079 | telencephalon | telencephalon increased amount , abnormal
telencephalon decreased amount , abnormal |
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| | ZFA:0000101 | diencephalon | diencephalon dorsal region increased amount , abnormal |
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| | ZFA:0000107 | eye | eye decreased size , abnormal |
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| | ZFA:0000128 | midbrain | midbrain decreased amount , abnormal |
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| | ZFA:0000137 | optic stalk | optic stalk increased amount , abnormal |
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| | ZFA:0000152 | retina | retina dopaminergic neuron decreased amount , abnormal |
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| | ZFA:0001114 | head | head cell death increased occurrence , abnormal
head decreased size , abnormal |
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| | ZFA:0001115 | trunk | trunk cell death increased occurrence , abnormal |
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| | ZFA:0001216 | splanchnocranium | splanchnocranium absent , abnormal |
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Interacting proteins (from Reactome)
No match
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