ENSGALG00000000747


Gallus gallus

Features
Gene ID: ENSGALG00000000747
  
Biological name :
  
Synonyms :
  
Possible biological names infered from orthology : A2A8L1 / CHD5 / chromodomain helicase DNA binding protein 5 / Q8TDI0
  
Species: Gallus gallus
  
Chr. number: 21
Strand: 1
Band:
Gene start: 633500
Gene end: 654242
  
Corresponding Affymetrix probe sets: Gga.1235.1.S1_at (Chicken Array)   Gga.18851.1.S1_at (Chicken Array)   GgaAffx.488.1.S1_at (Chicken Array)   GgaAffx.488.2.S1_s_at (Chicken Array)   GgaAffx.488.4.S1_at (Chicken Array)   GgaAffx.488.5.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000048091
Ensembl peptide - ENSGALP00000057658
Ensembl peptide - ENSGALP00000023295
NCBI entrez gene - 100857108     See in Manteia.
RefSeq - XM_015297056
RefSeq - XM_015297053
RefSeq - XM_015297054
RefSeq - XM_015297055
RefSeq - XM_015297046
RefSeq - XM_015297047
RefSeq - XM_015297049
RefSeq - XM_015297050
RefSeq - XM_015297051
RefSeq - XM_015297052
swissprot - A0A1D5PXG3
swissprot - F1NH78
swissprot - A0A1D5P5W8
Ensembl - ENSGALG00000000747
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 chd5ENSDARG00000105083Danio rerio
 CHD5ENSG00000116254Homo sapiens
 Chd5ENSMUSG00000005045Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
CHD4 / chromodomain helicase DNA binding protein 4 / Q14839* / Q6PDQ2* / Mus musculus chromodomain helicase DNA binding protein 4 (Chd4), mRNA.*ENSGALG0000001356569
CHD2 / E9PZM4* / O14647* / AC013394.1* / chromodomain helicase DNA binding protein 2*ENSGALG0000000694928
CHD1* / O14646* / P40201* / Q9CQS5* / chromodomain helicase DNA binding protein 1*ENSGALG0000003132727
CHD7 / Q06A37 / Chromodomain-helicase-DNA-binding protein 7 / A2AJK6* / Q9P2D1*ENSGALG0000004108027
CHD1Z / chromodomain-helicase-DNA-binding protein 1 / CHD1* / O14646* / P40201* / Q9CQS5*ENSGALG0000001464227
CHD9 / chromodomain helicase DNA binding protein 9 / Q3L8U1* / Q8BYH8*ENSGALG0000003917826
CHD6* / A3KFM7* / Q8TD26* / chromodomain helicase DNA binding protein 6*ENSGALG000000324178
CHD5* / A2A8L1* / Q8TDI0* / chromodomain helicase DNA binding protein 5*ENSGALG000000400771


Protein motifs (from Interpro)
Interpro ID Name
 IPR000330  SNF2-related, N-terminal domain
 IPR000953  Chromo/chromo shadow domain
 IPR001650  Helicase, C-terminal
 IPR001965  Zinc finger, PHD-type
 IPR002464  DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site
 IPR009462  Domain of unknown function DUF1086
 IPR009463  Domain of unknown function DUF1087
 IPR012957  CHD, C-terminal 2
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR014001  Helicase superfamily 1/2, ATP-binding domain
 IPR016197  Chromo-like domain superfamily
 IPR019786  Zinc finger, PHD-type, conserved site
 IPR019787  Zinc finger, PHD-finger
 IPR023780  Chromo domain
 IPR027417  P-loop containing nucleoside triphosphate hydrolase
 IPR028727  Chromodomain-helicase-DNA-binding protein 5


Gene Ontology (GO)
TypeGO IDTermEv.Code
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0005524 ATP binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

1 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr