ENSGALG00000031327


Gallus gallus

Features
Gene ID: ENSGALG00000031327
  
Biological name :
  
Synonyms :
  
Possible biological names infered from orthology : CHD1 / chromodomain helicase DNA binding protein 1 / O14646 / P40201 / Q9CQS5
  
Species: Gallus gallus
  
Chr. number: W
Strand: 1
Band:
Gene start: 4902847
Gene end: 5015333
  
Corresponding Affymetrix probe sets: Gga.8463.1.S1_s_at (Chicken Array)   GgaAffx.3466.1.S1_at (Chicken Array)   GgaAffx.9275.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000045452
Ensembl peptide - ENSGALP00000057923
Ensembl peptide - ENSGALP00000057339
Ensembl peptide - ENSGALP00000050950
Ensembl peptide - ENSGALP00000045808
NCBI entrez gene - 374195     See in Manteia.
RefSeq - XM_015300464
RefSeq - XM_015300460
RefSeq - XM_015300461
RefSeq - XM_015300462
RefSeq - XM_015300463
swissprot - A0A1D5PY74
swissprot - A0A1D5PWK5
swissprot - A0A1D5PDV4
swissprot - A0A1D5NZJ0
swissprot - A0A1D5NYJ4
Ensembl - ENSGALG00000031327
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 chd1ENSDARG00000103787Danio rerio
 CHD1ENSG00000153922Homo sapiens
 Chd1ENSMUSG00000023852Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
CHD1Z / chromodomain-helicase-DNA-binding protein 1 / CHD1* / O14646* / P40201* / Q9CQS5*ENSGALG0000001464293
CHD2 / E9PZM4* / O14647* / AC013394.1* / chromodomain helicase DNA binding protein 2*ENSGALG0000000694958
CHD4 / chromodomain helicase DNA binding protein 4 / Q14839* / Q6PDQ2* / Mus musculus chromodomain helicase DNA binding protein 4 (Chd4), mRNA.*ENSGALG0000001356526
CHD5* / A2A8L1* / Q8TDI0* / chromodomain helicase DNA binding protein 5*ENSGALG0000000074724
CHD7 / Q06A37 / Chromodomain-helicase-DNA-binding protein 7 / A2AJK6* / Q9P2D1*ENSGALG0000004108024
CHD9 / chromodomain helicase DNA binding protein 9 / Q3L8U1* / Q8BYH8*ENSGALG0000003917823
CHD6* / A3KFM7* / Q8TD26* / chromodomain helicase DNA binding protein 6*ENSGALG000000324176
CHD5* / A2A8L1* / Q8TDI0* / chromodomain helicase DNA binding protein 5*ENSGALG000000400773


Protein motifs (from Interpro)
Interpro ID Name
 IPR000330  SNF2-related, N-terminal domain
 IPR000953  Chromo/chromo shadow domain
 IPR001650  Helicase, C-terminal
 IPR014001  Helicase superfamily 1/2, ATP-binding domain
 IPR016197  Chromo-like domain superfamily
 IPR023779  Chromo domain, conserved site
 IPR023780  Chromo domain
 IPR025260  Domain of unknown function DUF4208
 IPR027417  P-loop containing nucleoside triphosphate hydrolase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0005524 ATP binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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