ENSGALG00000039178


Gallus gallus

Features
Gene ID: ENSGALG00000039178
  
Biological name :CHD9
  
Synonyms : CHD9 / chromodomain helicase DNA binding protein 9
  
Possible biological names infered from orthology : Q3L8U1 / Q8BYH8
  
Species: Gallus gallus
  
Chr. number: 11
Strand: -1
Band:
Gene start: 5117926
Gene end: 5162439
  
Corresponding Affymetrix probe sets: Gga.16910.1.S1_at (Chicken Array)   GgaAffx.2330.1.S1_at (Chicken Array)   GgaAffx.2330.1.S1_s_at (Chicken Array)   GgaAffx.2336.1.S1_at (Chicken Array)   GgaAffx.25957.1.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000047354
NCBI entrez gene - 415722     See in Manteia.
RefSeq - XM_015292377
RefSeq - XM_015292378
RefSeq - XM_015292379
RefSeq - XM_015292380
RefSeq - XM_015292381
RefSeq - XM_015292382
RefSeq - XM_015292383
RefSeq - XM_015292384
RefSeq - XM_015292385
RefSeq - XM_015292386
RefSeq - XM_015292376
swissprot - A0A1D5P3U9
Ensembl - ENSGALG00000039178
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 chd9ENSDARG00000074498Danio rerio
 CHD9ENSG00000177200Homo sapiens
 Chd9ENSMUSG00000056608Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
CHD7 / Q06A37 / Chromodomain-helicase-DNA-binding protein 7 / A2AJK6* / Q9P2D1*ENSGALG0000004108056
CHD4 / chromodomain helicase DNA binding protein 4 / Q14839* / Q6PDQ2* / Mus musculus chromodomain helicase DNA binding protein 4 (Chd4), mRNA.*ENSGALG0000001356518
CHD2 / E9PZM4* / O14647* / AC013394.1* / chromodomain helicase DNA binding protein 2*ENSGALG0000000694917
CHD1Z / chromodomain-helicase-DNA-binding protein 1 / CHD1* / O14646* / P40201* / Q9CQS5*ENSGALG0000001464217
CHD1* / O14646* / P40201* / Q9CQS5* / chromodomain helicase DNA binding protein 1*ENSGALG0000003132717
CHD5* / A2A8L1* / Q8TDI0* / chromodomain helicase DNA binding protein 5*ENSGALG0000000074717
CHD6* / A3KFM7* / Q8TD26* / chromodomain helicase DNA binding protein 6*ENSGALG0000003241713
CHD5* / A2A8L1* / Q8TDI0* / chromodomain helicase DNA binding protein 5*ENSGALG000000400772


Protein motifs (from Interpro)
Interpro ID Name
 IPR000330  SNF2-related, N-terminal domain
 IPR000953  Chromo/chromo shadow domain
 IPR001650  Helicase, C-terminal
 IPR006576  BRK domain
 IPR014001  Helicase superfamily 1/2, ATP-binding domain
 IPR016197  Chromo-like domain superfamily
 IPR023780  Chromo domain
 IPR027417  P-loop containing nucleoside triphosphate hydrolase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0005524 ATP binding IEA
 molecular_functionGO:0016817 hydrolase activity, acting on acid anhydrides IEA


Pathways (from Reactome)
Pathway description
Regulation of lipid metabolism by Peroxisome proliferator-activated receptor alpha (PPARalpha)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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