ENSMUSG00000056608


Mus musculus

Features
Gene ID: ENSMUSG00000056608
  
Biological name :Chd9
  
Synonyms : Chd9 / Chromodomain-helicase-DNA-binding protein 9 / Q8BYH8
  
Possible biological names infered from orthology : Q3L8U1
  
Species: Mus musculus
  
Chr. number: 8
Strand: 1
Band: C4
Gene start: 90828352
Gene end: 91054516
  
Corresponding Affymetrix probe sets: 10573823 (MoGene1.0st)   1441339_at (Mouse Genome 430 2.0 Array)   1455892_x_at (Mouse Genome 430 2.0 Array)   1457672_at (Mouse Genome 430 2.0 Array)   1458078_at (Mouse Genome 430 2.0 Array)   1459450_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000147407
Ensembl peptide - ENSMUSP00000147296
Ensembl peptide - ENSMUSP00000147741
Ensembl peptide - ENSMUSP00000148088
Ensembl peptide - ENSMUSP00000147839
Ensembl peptide - ENSMUSP00000046356
Ensembl peptide - ENSMUSP00000105243
NCBI entrez gene - 109151     See in Manteia.
MGI - MGI:1924001
RefSeq - XM_017312521
RefSeq - XM_011248273
RefSeq - XM_011248274
RefSeq - XM_011248275
RefSeq - XM_017312517
RefSeq - XM_017312518
RefSeq - XM_017312519
RefSeq - XM_017312520
RefSeq - NM_001310530
RefSeq - NM_177224
RefSeq - XM_006530569
RefSeq - XM_006530570
RefSeq - XM_006530571
RefSeq - XM_006530572
RefSeq - XM_011248272
RefSeq Peptide - NP_001297459
RefSeq Peptide - NP_796198
swissprot - A0A1B0GR76
swissprot - A0A1B0GS89
swissprot - A0A1B0GQX8
swissprot - Q8BYH8
swissprot - A0A1B0GS03
Ensembl - ENSMUSG00000056608
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 chd9ENSDARG00000074498Danio rerio
 CHD9ENSGALG00000039178Gallus gallus
 CHD9ENSG00000177200Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Chd7 / A2AJK6 / Chromodomain-helicase-DNA-binding protein 7 / Q9P2D1*ENSMUSG0000004123550
Chd8 / Q09XV5 / Chromodomain-helicase-DNA-binding protein 8 / Q9HCK8*ENSMUSG0000005375445
Chd6 / A3KFM7 / Chromodomain-helicase-DNA-binding protein 6 / Q8TD26*ENSMUSG0000005713341
Chd3 / chromodomain helicase DNA binding protein 3 / Q12873*ENSMUSG0000001847417
Chd5 / A2A8L1 / Chromodomain-helicase-DNA-binding protein 5 / Q8TDI0*ENSMUSG0000000504517
Chd4 / Q6PDQ2 / Mus musculus chromodomain helicase DNA binding protein 4 (Chd4), mRNA. / Q14839* / chromodomain helicase DNA binding protein 4*ENSMUSG0000006387016
Chd1 / P40201 / Q9CQS5 / Chromodomain-helicase-DNA-binding protein 1 / O14646*ENSMUSG0000002385215
Chd2 / E9PZM4 / Chromodomain-helicase-DNA-binding protein 2 / O14647*ENSMUSG0000007867115


Protein motifs (from Interpro)
Interpro ID Name
 IPR000330  SNF2-related, N-terminal domain
 IPR000953  Chromo/chromo shadow domain
 IPR001650  Helicase, C-terminal
 IPR006576  BRK domain
 IPR014001  Helicase superfamily 1/2, ATP-binding domain
 IPR016197  Chromo-like domain superfamily
 IPR023780  Chromo domain
 IPR027417  P-loop containing nucleoside triphosphate hydrolase
 IPR037259  BRK domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006325 chromatin organization IEA
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0008150 biological_process ND
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005737 cytoplasm IEA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0004386 helicase activity IEA
 molecular_functionGO:0005515 protein binding IEA
 molecular_functionGO:0005524 ATP binding IEA
 molecular_functionGO:0016787 hydrolase activity IEA
 molecular_functionGO:0016817 hydrolase activity, acting on acid anhydrides IEA


Pathways (from Reactome)
Pathway description
Regulation of lipid metabolism by Peroxisome proliferator-activated receptor alpha (PPARalpha)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 MP:0002968 increased circulating alkaline phosphatase level "elevated activity of this enzyme, which hydrolyzes orthophosphoric monoesters, found in the blood" [RGD:Rat Genome Database submission, Stedman s Medical Dictionary , 27th edition:ISBN 0-683-40008-8]
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Allelic Composition: Bach2tm1a(EUCOMM)Wtsi/Bach2tm1a(EUCOMM)Wtsi
Genetic Background: C57BL/6N-Bach2tm1a(EUCOMM)Wtsi/Wtsi

 MP:0005419 hypoalbuminemia "blood albumin concentration below the normal range" [MeSH:National Library of Medicine - Medical Subject Headings , 2003]
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Allelic Composition: Bach2tm1a(EUCOMM)Wtsi/Bach2tm1a(EUCOMM)Wtsi
Genetic Background: C57BL/6N-Bach2tm1a(EUCOMM)Wtsi/Wtsi

 MP:0008805 decreased circulating amylase level "reduction in the concentration of a group of amylolytic enzymes that cleave starch, glycogen, and related alpha-1,4-glucans in the blood" [ISBN:0-683-40008-8 "Stedman s Medical Dictionary, 27th edition", MESH:D08.811.277.450.066, MGI:brs "Beverly Richards-Smith, Mouse Genome Informatics Curator"]
Show

Allelic Composition: Bach2tm1a(EUCOMM)Wtsi/Bach2tm1a(EUCOMM)Wtsi
Genetic Background: C57BL/6N-Bach2tm1a(EUCOMM)Wtsi/Wtsi

 MP:0013158 decreased KLRG1+ CD4 alpha beta T cell number "reduction in the number of CD4+ alpha beta T cells that express KLRG1, a marker of effector/memory and regulatory T cells" [MGI:csmith]
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Allelic Composition: Bach2tm1a(EUCOMM)Wtsi/Bach2tm1a(EUCOMM)Wtsi
Genetic Background: C57BL/6N-Bach2tm1a(EUCOMM)Wtsi/Wtsi

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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