ENSG00000177200


Homo sapiens

Features
Gene ID: ENSG00000177200
  
Biological name :CHD9
  
Synonyms : CHD9 / chromodomain helicase DNA binding protein 9 / Q3L8U1
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 16
Strand: 1
Band: q12.2
Gene start: 53055033
Gene end: 53329150
  
Corresponding Affymetrix probe sets: 212615_at (Human Genome U133 Plus 2.0 Array)   212616_at (Human Genome U133 Plus 2.0 Array)   220586_at (Human Genome U133 Plus 2.0 Array)   229586_at (Human Genome U133 Plus 2.0 Array)   235388_at (Human Genome U133 Plus 2.0 Array)   239654_at (Human Genome U133 Plus 2.0 Array)   242157_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000462685
Ensembl peptide - ENSP00000462008
Ensembl peptide - ENSP00000478361
Ensembl peptide - ENSP00000381522
Ensembl peptide - ENSP00000396345
Ensembl peptide - ENSP00000455307
Ensembl peptide - ENSP00000456415
Ensembl peptide - ENSP00000456793
Ensembl peptide - ENSP00000457355
Ensembl peptide - ENSP00000457466
Ensembl peptide - ENSP00000457929
Ensembl peptide - ENSP00000460155
NCBI entrez gene - 80205     See in Manteia.
OMIM - 616936
RefSeq - XM_017023728
RefSeq - XM_006721283
RefSeq - XM_011523347
RefSeq - XM_017023718
RefSeq - XM_017023719
RefSeq - XM_017023720
RefSeq - XM_017023721
RefSeq - XM_017023722
RefSeq - XM_017023723
RefSeq - XM_017023724
RefSeq - XM_017023725
RefSeq - XM_017023726
RefSeq - XM_017023727
RefSeq - NM_001308319
RefSeq - NM_001352127
RefSeq - NM_025134
RefSeq - XM_005256168
RefSeq - XM_005256169
RefSeq - XM_005256172
RefSeq - XM_005256176
RefSeq - XM_006721281
RefSeq Peptide - NP_079410
RefSeq Peptide - NP_001295248
RefSeq Peptide - NP_001339056
swissprot - H3BV31
swissprot - I3L340
swissprot - J3KRH9
swissprot - H3BRU9
swissprot - Q3L8U1
swissprot - A0A087WU44
swissprot - J3KSW5
swissprot - H3BSP3
swissprot - H3BTW3
Ensembl - ENSG00000177200
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 chd9ENSDARG00000074498Danio rerio
 CHD9ENSGALG00000039178Gallus gallus
 Chd9ENSMUSG00000056608Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
CHD7 / Q9P2D1 / chromodomain helicase DNA binding protein 7ENSG0000017131651
CHD8 / Q9HCK8 / chromodomain helicase DNA binding protein 8ENSG0000010088846
CHD6 / Q8TD26 / chromodomain helicase DNA binding protein 6ENSG0000012417741
CHD3 / Q12873 / chromodomain helicase DNA binding protein 3ENSG0000017000417
CHD5 / Q8TDI0 / chromodomain helicase DNA binding protein 5ENSG0000011625416
CHD4 / Q14839 / chromodomain helicase DNA binding protein 4ENSG0000011164216
CHD2 / O14647 / chromodomain helicase DNA binding protein 2ENSG0000017357515
CHD1 / O14646 / chromodomain helicase DNA binding protein 1ENSG0000015392215
AC013394.1ENSG000002797651


Protein motifs (from Interpro)
Interpro ID Name
 IPR000330  SNF2-related, N-terminal domain
 IPR000953  Chromo/chromo shadow domain
 IPR001650  Helicase, C-terminal
 IPR006576  BRK domain
 IPR014001  Helicase superfamily 1/2, ATP-binding domain
 IPR016197  Chromo-like domain superfamily
 IPR023780  Chromo domain
 IPR027417  P-loop containing nucleoside triphosphate hydrolase
 IPR037259  BRK domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006325 chromatin organization IEA
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0019216 regulation of lipid metabolic process TAS
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm TAS
 cellular_componentGO:0005737 cytoplasm IEA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0004386 helicase activity IEA
 molecular_functionGO:0005515 protein binding IEA
 molecular_functionGO:0005524 ATP binding IEA
 molecular_functionGO:0016787 hydrolase activity IEA
 molecular_functionGO:0016817 hydrolase activity, acting on acid anhydrides IEA


Pathways (from Reactome)
Pathway description
RORA activates gene expression
BMAL1:CLOCK,NPAS2 activates circadian gene expression
PPARA activates gene expression
Transcriptional activation of mitochondrial biogenesis
Activation of gene expression by SREBF (SREBP)
Transcriptional regulation of white adipocyte differentiation
Regulation of lipid metabolism by Peroxisome proliferator-activated receptor alpha (PPARalpha)
Circadian Clock


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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