ENSG00000173575


Homo sapiens

Features
Gene ID: ENSG00000173575
  
Biological name :CHD2
  
Synonyms : CHD2 / chromodomain helicase DNA binding protein 2 / O14647
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 15
Strand: 1
Band: q26.1
Gene start: 92900189
Gene end: 93028005
  
Corresponding Affymetrix probe sets: 1554014_at (Human Genome U133 Plus 2.0 Array)   1554015_a_at (Human Genome U133 Plus 2.0 Array)   203461_at (Human Genome U133 Plus 2.0 Array)   225077_at (Human Genome U133 Plus 2.0 Array)   228999_at (Human Genome U133 Plus 2.0 Array)   243751_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000377747
Ensembl peptide - ENSP00000489976
Ensembl peptide - ENSP00000489846
Ensembl peptide - ENSP00000489767
Ensembl peptide - ENSP00000487577
Ensembl peptide - ENSP00000487299
Ensembl peptide - ENSP00000486931
Ensembl peptide - ENSP00000486926
Ensembl peptide - ENSP00000486629
Ensembl peptide - ENSP00000486487
Ensembl peptide - ENSP00000486417
Ensembl peptide - ENSP00000486391
Ensembl peptide - ENSP00000486007
Ensembl peptide - ENSP00000485982
Ensembl peptide - ENSP00000485890
Ensembl peptide - ENSP00000485681
Ensembl peptide - ENSP00000406581
NCBI entrez gene - 1106     See in Manteia.
OMIM - 602119
RefSeq - NM_001042572
RefSeq - NM_001271
RefSeq Peptide - NP_001036037
RefSeq Peptide - NP_001262
swissprot - A0A0D9SGA6
swissprot - A0A0D9SFV8
swissprot - A0A0D9SFV4
swissprot - A0A0D9SFA3
swissprot - A0A0D9SF92
swissprot - A0A0D9SEU0
swissprot - A0A0D9SET4
swissprot - A0A0D9SEP7
swissprot - A0A0D9SEH6
swissprot - A0A024RC75
swissprot - B7Z3I4
swissprot - O14647
swissprot - A0A1B0GU59
swissprot - A0A1B0GTU9
swissprot - A0A1B0GTM9
swissprot - A0A0D9SGK0
Ensembl - ENSG00000173575
  
Related genetic diseases (OMIM): 615369 - Epileptic encephalopathy, childhood-onset, 615369
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 chd2ENSDARG00000060687Danio rerio
 CHD2ENSGALG00000006949Gallus gallus
 Chd2ENSMUSG00000078671Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
CHD1 / O14646 / chromodomain helicase DNA binding protein 1ENSG0000015392258
CHD4 / Q14839 / chromodomain helicase DNA binding protein 4ENSG0000011164228
CHD5 / Q8TDI0 / chromodomain helicase DNA binding protein 5ENSG0000011625427
CHD3 / Q12873 / chromodomain helicase DNA binding protein 3ENSG0000017000427
CHD7 / Q9P2D1 / chromodomain helicase DNA binding protein 7ENSG0000017131624
CHD9 / Q3L8U1 / chromodomain helicase DNA binding protein 9ENSG0000017720024
CHD8 / Q9HCK8 / chromodomain helicase DNA binding protein 8ENSG0000010088824
CHD6 / Q8TD26 / chromodomain helicase DNA binding protein 6ENSG0000012417723
AC013394.1ENSG000002797657


Protein motifs (from Interpro)
Interpro ID Name
 IPR000330  SNF2-related, N-terminal domain
 IPR000953  Chromo/chromo shadow domain
 IPR001650  Helicase, C-terminal
 IPR014001  Helicase superfamily 1/2, ATP-binding domain
 IPR016197  Chromo-like domain superfamily
 IPR023779  Chromo domain, conserved site
 IPR023780  Chromo domain
 IPR025260  Domain of unknown function DUF4208
 IPR027417  P-loop containing nucleoside triphosphate hydrolase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006325 chromatin organization IEA
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006357 regulation of transcription by RNA polymerase II TAS
 biological_processGO:0006974 cellular response to DNA damage stimulus IEA
 biological_processGO:0007517 muscle organ development ISS
 biological_processGO:0032508 DNA duplex unwinding IEA
 biological_processGO:0043044 ATP-dependent chromatin remodeling IEA
 biological_processGO:0060218 hematopoietic stem cell differentiation IEA
 cellular_componentGO:0005634 nucleus IDA
 cellular_componentGO:0005654 nucleoplasm IDA
 cellular_componentGO:0005730 nucleolus IDA
 cellular_componentGO:0043231 intracellular membrane-bounded organelle IDA
 cellular_componentGO:0070062 extracellular exosome HDA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0001046 core promoter sequence-specific DNA binding IEA
 molecular_functionGO:0003677 DNA binding TAS
 molecular_functionGO:0003723 RNA binding HDA
 molecular_functionGO:0004003 ATP-dependent DNA helicase activity TAS
 molecular_functionGO:0004386 helicase activity IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0005524 ATP binding IEA
 molecular_functionGO:0016787 hydrolase activity IEA
 molecular_functionGO:0042393 histone binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000718 Aggressive behavior "Aggressive behavior can denote verbal aggression, physical aggression against objects, physical aggression against people, and may also include aggression towards oneself." [HPO:curators]
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 HP:0000729 Pervasive developmental disorder 
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 HP:0000752 Hyperactivity 
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 HP:0000992 Photosensitivity "An increased sensitivity of the skin to light. Photosensitivity may result in a rash upon exposure to the sun (which is known as photodermatosis). Photosensitivity can be diagnosed by phototests in which light is shone on small areas of skin." [HPO:curators]
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 HP:0001249 Mental retardation 
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 HP:0001251 Ataxia "Ataxia is a nonspecific neurological sign and symptom consisting of gross lack of coordination of muscle movements. Ataxia is caused by dysfunction of one or more parts of the nervous system including the cerebellum, the sensory nervous system, the vestibular system, or the cerebral cortex." [HPO:curators]
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 HP:0001260 Dysarthria "Dysarthric speech is a general description referring to a neurological speech disorder characterized by poor articulation. Depending on the involved neurological structures, dysarthria may be further classified as spastic, flaccid, ataxic, hyperkinetic and hypokinetic, or mixed." [HPO:curators]
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001268 Mental deterioration 
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 HP:0001298 Encephalopathy 
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 HP:0001336 Myoclonus "Very brief, involuntary random muscular contractions occurring at rest, in response to sensory stimuli, or accompanying voluntary movements." [HPO:curators]
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 HP:0002069 Generalized tonic-clonic seizures "Generalized tonic-clonic seizures are `generalized seizures` (HP:0002197) in which the patient suddenly loses conciousness, the eyes roll back, and the entire body musculature undergoes tonic contractions. In the clonic phase of the seizure, there are rhythmic contractions of the musculature alternating with relaxation of all muscle groups. Loss of sphincter control during the seizure is common. This form of seizure was formerly commonly called grand mal seizure." [HPO:curators]
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 HP:0002121 Absence seizures "Recurrent absence seizures are `generalized seizures` (HP:0002197) that are characterized by a sudden cessation of motor activity and by a blank facial expression with flickering of the eyelids. There is no convulsive muscular activity or loss of postural control." [HPO:probinson]
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 HP:0002123 Myoclonic seizures "Myoclonic seizures are sudden, brief losses of consciousness and postural tone not associated with tonic muscular contractions. Myoclonic seizures may involve one body part or the entire body. In the latter case, the myoclonic seizure is accompanied by a violent fall but not by loss of consciousness." [HPO:curators]
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 HP:0002133 Status epilepticus 
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 HP:0002353 EEG abnormalities "Abnormality observed by electroencephalogram (EEG), which is used to record of the brain s spontaneous electrical activity from multiple electrodes placed on the scalp." [HPO:curators]
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 HP:0002363 Abnormality of the brainstem 
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 HP:0002373 Febrile seizures "Febrile seizures are convulsions induced by a fever in infants or small children and are generally characterized by loss of consciousness and tonic-clonic movements. Most febrile seizures last a minute or two." [HPO:curators]
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 HP:0002376 Developmental regression 
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 HP:0002527 Falls 
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 HP:0007207 Seizures, tonic-clonic, photosensitive 
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 HP:0007270 Atypical absence seizures 
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 HP:0007359 Partial seizures "Recurrent partial `seizures` (HP:0001250). In a partial seizure, the electrical disturbance is limited to one part or side of the brain. That is, partial epilepsies are epileptic disorders in which clinical or laboratory findings disclose a localized origin of seizures." [HPO:curators]
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 HP:0010818 Tonic seizures "A type of `seizure` (HP:0001250) characterized by a sudden increase in muscle tone whereby the body, arms, or legs make sudden stiffening movements and consciousness is usually preserved. Tonic seizures can occur during sleep. Tonic seizures usually affect both sides of the body, and cause a fall if the affected person was standing when the seizure started." [HPO:probinson]
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 HP:0010819 Atonic seizures "A type of `seizure` (HP:0001250) characterized by a suddenloss of musle tone. Usually, consciousness is retained. In an atonic seizure, the eyelids may droop, the head may nod, and the person may drop things and fall to the ground." [HPO:probinson]
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 HP:0010849 EEG: spike-wave complexes (>3.5 Hz) "The presence of complexes of spikes and waves (>3.5 Hz) in electroencephalography (EEG)." [HPO:probinson]
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 HP:0011170 Myoclonic atonic seizures "Seizures with sudden loss or diminution of muscle tone with a preceding myoclonic or tonic event lasting one to two seconds or more, involving head, trunk, jaw or limb musculature." [HPO:jalbers]
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 HP:0011195 EEG with focal sharp slow waves "EEG with focal sharp transient waves of a duration between 80 and 200 msec followed by a slow wave." [HPO:jalbers]
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 HP:0011203 EEG with abnormally slow frequencies "EEG with abnormally slow frequencies." [HPO:jalbers]
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 HP:0012075 Personality disorder "An abnormality of mental functioning affecting the personality and behavioural tendencies of an individual and characterized by a rigid and unhealthy pattern of thinking and behavior. The definition of a personal disorder implies that the abnormality is not the result of damage or insult to the brain or from another psychiatric disorder." [HPO:probinson]
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 HP:0012658 Abnormal brain FDG positron emission tomography "An anomaly detectable in [18F]-fluorodeoxyglucose (FDG) positron emission tomography (PET) brain scans. Glucose uptake measured with FDG-PET is a marker of neuronal metabolic activity." [HPO:probinson]
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 HP:0100710 Impulsivity 
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 HP:0200134 Epileptic encephalopathy 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr