ENSGALG00000006949


Gallus gallus

Features
Gene ID: ENSGALG00000006949
  
Biological name :CHD2
  
Synonyms : CHD2
  
Possible biological names infered from orthology : AC013394.1 / chromodomain helicase DNA binding protein 2 / E9PZM4 / O14647
  
Species: Gallus gallus
  
Chr. number: 10
Strand: 1
Band:
Gene start: 14615742
Gene end: 14681032
  
Corresponding Affymetrix probe sets: Gga.12681.1.S1_s_at (Chicken Array)   Gga.3633.1.S1_at (Chicken Array)   GgaAffx.21556.1.S1_s_at (Chicken Array)   GgaAffx.8318.3.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000011246
Ensembl peptide - ENSGALP00000054139
NCBI entrez gene - 415507     See in Manteia.
RefSeq - NM_001278454
RefSeq Peptide - NP_001265383
swissprot - E1C1A9
swissprot - A0A1D5PMQ3
Ensembl - ENSGALG00000006949
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 chd2ENSDARG00000060687Danio rerio
 AC013394.1ENSG00000279765Homo sapiens
 CHD2ENSG00000173575Homo sapiens
 Chd2ENSMUSG00000078671Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
CHD1Z / chromodomain-helicase-DNA-binding protein 1 / CHD1* / O14646* / P40201* / Q9CQS5*ENSGALG0000001464258
CHD1* / O14646* / P40201* / Q9CQS5* / chromodomain helicase DNA binding protein 1*ENSGALG0000003132756
CHD4 / chromodomain helicase DNA binding protein 4 / Q14839* / Q6PDQ2* / Mus musculus chromodomain helicase DNA binding protein 4 (Chd4), mRNA.*ENSGALG0000001356528
CHD5* / A2A8L1* / Q8TDI0* / chromodomain helicase DNA binding protein 5*ENSGALG0000000074724
CHD7 / Q06A37 / Chromodomain-helicase-DNA-binding protein 7 / A2AJK6* / Q9P2D1*ENSGALG0000004108024
CHD9 / chromodomain helicase DNA binding protein 9 / Q3L8U1* / Q8BYH8*ENSGALG0000003917823
CHD6* / A3KFM7* / Q8TD26* / chromodomain helicase DNA binding protein 6*ENSGALG000000324176
CHD5* / A2A8L1* / Q8TDI0* / chromodomain helicase DNA binding protein 5*ENSGALG000000400774


Protein motifs (from Interpro)
Interpro ID Name
 IPR000330  SNF2-related, N-terminal domain
 IPR000953  Chromo/chromo shadow domain
 IPR001650  Helicase, C-terminal
 IPR014001  Helicase superfamily 1/2, ATP-binding domain
 IPR016197  Chromo-like domain superfamily
 IPR023779  Chromo domain, conserved site
 IPR023780  Chromo domain
 IPR025260  Domain of unknown function DUF4208
 IPR027417  P-loop containing nucleoside triphosphate hydrolase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006974 cellular response to DNA damage stimulus IEA
 biological_processGO:0007517 muscle organ development IEA
 biological_processGO:0060218 hematopoietic stem cell differentiation IEA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0001046 core promoter sequence-specific DNA binding IEA
 molecular_functionGO:0005524 ATP binding IEA
 molecular_functionGO:0042393 histone binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

1 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr