ENSGALG00000014642


Gallus gallus

Features
Gene ID: ENSGALG00000014642
  
Biological name :CHD1Z
  
Synonyms : CHD1Z / chromodomain-helicase-DNA-binding protein 1
  
Possible biological names infered from orthology : CHD1 / O14646 / P40201 / Q9CQS5
  
Species: Gallus gallus
  
Chr. number: Z
Strand: 1
Band:
Gene start: 51274317
Gene end: 51349988
  
Corresponding Affymetrix probe sets: Gga.4301.1.S1_at (Chicken Array)   Gga.4301.2.S1_a_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000024615
Ensembl peptide - ENSGALP00000063265
Ensembl peptide - ENSGALP00000046367
Ensembl peptide - ENSGALP00000043892
Ensembl peptide - ENSGALP00000023555
NCBI entrez gene - 395783     See in Manteia.
RefSeq - NM_204941
RefSeq Peptide - NP_990272
swissprot - A0A1D5NU83
swissprot - A0A1L1RWP7
swissprot - F1NP27
swissprot - F1N8K8
swissprot - A0A1D5P136
Ensembl - ENSGALG00000014642
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 chd1ENSDARG00000103787Danio rerio
 CHD1ENSG00000153922Homo sapiens
 Chd1ENSMUSG00000023852Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
CHD1* / O14646* / P40201* / Q9CQS5* / chromodomain helicase DNA binding protein 1*ENSGALG0000003132792
CHD2 / E9PZM4* / O14647* / AC013394.1* / chromodomain helicase DNA binding protein 2*ENSGALG0000000694959
CHD4 / chromodomain helicase DNA binding protein 4 / Q14839* / Q6PDQ2* / Mus musculus chromodomain helicase DNA binding protein 4 (Chd4), mRNA.*ENSGALG0000001356527
CHD7 / Q06A37 / Chromodomain-helicase-DNA-binding protein 7 / A2AJK6* / Q9P2D1*ENSGALG0000004108024
CHD5* / A2A8L1* / Q8TDI0* / chromodomain helicase DNA binding protein 5*ENSGALG0000000074724
CHD9 / chromodomain helicase DNA binding protein 9 / Q3L8U1* / Q8BYH8*ENSGALG0000003917823
CHD6* / A3KFM7* / Q8TD26* / chromodomain helicase DNA binding protein 6*ENSGALG000000324176
CHD5* / A2A8L1* / Q8TDI0* / chromodomain helicase DNA binding protein 5*ENSGALG000000400774


Protein motifs (from Interpro)
Interpro ID Name
 IPR000330  SNF2-related, N-terminal domain
 IPR000953  Chromo/chromo shadow domain
 IPR001650  Helicase, C-terminal
 IPR014001  Helicase superfamily 1/2, ATP-binding domain
 IPR016197  Chromo-like domain superfamily
 IPR023779  Chromo domain, conserved site
 IPR023780  Chromo domain
 IPR025260  Domain of unknown function DUF4208
 IPR027417  P-loop containing nucleoside triphosphate hydrolase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0005524 ATP binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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