ENSGALG00000013565


Gallus gallus

Features
Gene ID: ENSGALG00000013565
  
Biological name :CHD4
  
Synonyms : CHD4 / chromodomain helicase DNA binding protein 4
  
Possible biological names infered from orthology : Mus musculus chromodomain helicase DNA binding protein 4 (Chd4), mRNA. / Q14839 / Q6PDQ2
  
Species: Gallus gallus
  
Chr. number: 1
Strand: -1
Band:
Gene start: 76988085
Gene end: 77010194
  
Corresponding Affymetrix probe sets: Gga.11742.1.S1_at (Chicken Array)   GgaAffx.9174.1.S1_at (Chicken Array)   GgaAffx.9174.2.S1_at (Chicken Array)   GgaAffx.9174.2.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000023294
NCBI entrez gene - 418278     See in Manteia.
RefSeq - XM_015293639
RefSeq - XM_015293647
RefSeq - XM_015293654
RefSeq - XM_015293657
RefSeq - XM_015293661
RefSeq - XM_015293665
RefSeq - XM_015293636
swissprot - F1NH79
Ensembl - ENSGALG00000013565
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 chd4aENSDARG00000063535Danio rerio
 chd4bENSDARG00000025789Danio rerio
 CHD4ENSG00000111642Homo sapiens
 Chd4ENSMUSG00000063870Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
CHD5* / A2A8L1* / Q8TDI0* / chromodomain helicase DNA binding protein 5*ENSGALG0000000074757
CHD2 / E9PZM4* / O14647* / AC013394.1* / chromodomain helicase DNA binding protein 2*ENSGALG0000000694927
CHD7 / Q06A37 / Chromodomain-helicase-DNA-binding protein 7 / A2AJK6* / Q9P2D1*ENSGALG0000004108026
CHD1* / O14646* / P40201* / Q9CQS5* / chromodomain helicase DNA binding protein 1*ENSGALG0000003132725
CHD1Z / chromodomain-helicase-DNA-binding protein 1 / CHD1* / O14646* / P40201* / Q9CQS5*ENSGALG0000001464225
CHD9 / chromodomain helicase DNA binding protein 9 / Q3L8U1* / Q8BYH8*ENSGALG0000003917823
CHD5* / A2A8L1* / Q8TDI0* / chromodomain helicase DNA binding protein 5*ENSGALG0000004007713
CHD6* / A3KFM7* / Q8TD26* / chromodomain helicase DNA binding protein 6*ENSGALG000000324176


Protein motifs (from Interpro)
Interpro ID Name
 IPR000330  SNF2-related, N-terminal domain
 IPR000953  Chromo/chromo shadow domain
 IPR001650  Helicase, C-terminal
 IPR001965  Zinc finger, PHD-type
 IPR002464  DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site
 IPR009462  Domain of unknown function DUF1086
 IPR009463  Domain of unknown function DUF1087
 IPR011011  Zinc finger, FYVE/PHD-type
 IPR012957  CHD, C-terminal 2
 IPR012958  CHD, N-terminal
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR014001  Helicase superfamily 1/2, ATP-binding domain
 IPR016197  Chromo-like domain superfamily
 IPR019786  Zinc finger, PHD-type, conserved site
 IPR019787  Zinc finger, PHD-finger
 IPR023780  Chromo domain
 IPR027417  P-loop containing nucleoside triphosphate hydrolase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0016581 NuRD complex IEA
 cellular_componentGO:0032993 protein-DNA complex IEA
 molecular_functionGO:0005524 ATP binding IEA
 molecular_functionGO:0008134 transcription factor binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
Regulation of TP53 Activity through Acetylation
RNA Polymerase I Transcription Initiation
Regulation of PTEN gene transcription


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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