ENSDARG00000103787


Danio rerio

Features
Gene ID: ENSDARG00000103787
  
Biological name :chd1
  
Synonyms : chd1 / chromodomain helicase DNA binding protein 1
  
Possible biological names infered from orthology : O14646 / P40201 / Q9CQS5
  
Species: Danio rerio
  
Chr. number: 10
Strand: -1
Band:
Gene start: 6521376
Gene end: 6588793
  
Corresponding Affymetrix probe sets: Dr.10061.1.A1_at (Zebrafish Array)   Dr.10061.2.A1_at (Zebrafish Array)   Dr.13052.1.A1_at (Zebrafish Array)   Dr.13052.2.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000130398
Ensembl peptide - ENSDARP00000131003
NCBI entrez gene - 563236     See in Manteia.
RefSeq - XM_009305100
RefSeq - XM_009305101
swissprot - A0A0R4IC05
swissprot - A0A0R4IAE4
ZFIN ID - ZDB-GENE-030131-7120
Ensembl - ENSDARG00000103787
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ENSGALG00000031327Gallus gallus
 CHD1ZENSGALG00000014642Gallus gallus
 CHD1ENSG00000153922Homo sapiens
 Chd1ENSMUSG00000023852Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
chd2 / chromodomain helicase DNA binding protein 2 / E9PZM4* / O14647* / AC013394.1*ENSDARG0000006068755
chd5 / chromodomain helicase DNA binding protein 5 / A2A8L1* / Q8TDI0*ENSDARG0000010508327
chd4a / chromodomain helicase DNA binding protein 4a / CHD4* / Q14839* / Q6PDQ2* / chromodomain helicase DNA binding protein 4* / Mus musculus chromodomain helicase DNA binding protein 4 (C...ENSDARG0000006353526
chd3 / chromodomain helicase DNA binding protein 3 / Q12873*ENSDARG0000002140525
chd4b / chromodomain helicase DNA binding protein 4b / CHD4* / Q14839* / Q6PDQ2* / chromodomain helicase DNA binding protein 4* / Mus musculus chromodomain helicase DNA binding protein 4 (C...ENSDARG0000002578925
chd7 / chromodomain helicase DNA binding protein 7 / A2AJK6* / Q9P2D1*ENSDARG0000007521124
chd6 / chromodomain helicase DNA binding protein 6 / Q8TD26*ENSDARG0000001724423
chd8 / chromodomain helicase DNA binding protein 8 / Q09XV5* / Q9HCK8*ENSDARG0000007554323
chd9 / chromodomain helicase DNA binding protein 9 / Q3L8U1* / Q8BYH8*ENSDARG0000007449822


Protein motifs (from Interpro)
Interpro ID Name
 IPR000330  SNF2-related, N-terminal domain
 IPR000953  Chromo/chromo shadow domain
 IPR001650  Helicase, C-terminal
 IPR014001  Helicase superfamily 1/2, ATP-binding domain
 IPR016197  Chromo-like domain superfamily
 IPR023779  Chromo domain, conserved site
 IPR023780  Chromo domain
 IPR025260  Domain of unknown function DUF4208
 IPR027417  P-loop containing nucleoside triphosphate hydrolase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0005524 ATP binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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