ENSDARG00000074498


Danio rerio

Features
Gene ID: ENSDARG00000074498
  
Biological name :chd9
  
Synonyms : chd9 / chromodomain helicase DNA binding protein 9
  
Possible biological names infered from orthology : Q3L8U1 / Q8BYH8
  
Species: Danio rerio
  
Chr. number: 7
Strand: 1
Band:
Gene start: 36484598
Gene end: 36621294
  
Corresponding Affymetrix probe sets: Dr.23629.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000142677
Ensembl peptide - ENSDARP00000142882
Ensembl peptide - ENSDARP00000142826
NCBI entrez gene - 572355     See in Manteia.
RefSeq - XM_005169017
RefSeq - XM_021477924
RefSeq - XM_021477925
RefSeq - XM_001922501
swissprot - A0A1D5NSR4
swissprot - A0A1D5NSK9
swissprot - A0A1D5NS67
ZFIN ID - ZDB-GENE-030131-497
Ensembl - ENSDARG00000074498
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 CHD9ENSGALG00000039178Gallus gallus
 CHD9ENSG00000177200Homo sapiens
 Chd9ENSMUSG00000056608Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
chd7 / chromodomain helicase DNA binding protein 7 / A2AJK6* / Q9P2D1*ENSDARG0000007521151
chd6 / chromodomain helicase DNA binding protein 6 / Q8TD26*ENSDARG0000001724446
chd8 / chromodomain helicase DNA binding protein 8 / Q09XV5* / Q9HCK8*ENSDARG0000007554344
chd3 / chromodomain helicase DNA binding protein 3 / Q12873*ENSDARG0000002140518
chd4b / chromodomain helicase DNA binding protein 4b / CHD4* / Q14839* / Q6PDQ2* / chromodomain helicase DNA binding protein 4* / Mus musculus chromodomain helicase DNA binding protein 4 (C...ENSDARG0000002578918
chd5 / chromodomain helicase DNA binding protein 5 / A2A8L1* / Q8TDI0*ENSDARG0000010508318
chd4a / chromodomain helicase DNA binding protein 4a / CHD4* / Q14839* / Q6PDQ2* / chromodomain helicase DNA binding protein 4* / Mus musculus chromodomain helicase DNA binding protein 4 (C...ENSDARG0000006353518
chd2 / chromodomain helicase DNA binding protein 2 / E9PZM4* / O14647* / AC013394.1*ENSDARG0000006068717
chd1 / chromodomain helicase DNA binding protein 1 / O14646* / P40201* / Q9CQS5*ENSDARG0000010378716


Protein motifs (from Interpro)
Interpro ID Name
 IPR000330  SNF2-related, N-terminal domain
 IPR000953  Chromo/chromo shadow domain
 IPR001650  Helicase, C-terminal
 IPR006576  BRK domain
 IPR014001  Helicase superfamily 1/2, ATP-binding domain
 IPR015943  WD40/YVTN repeat-like-containing domain superfamily
 IPR016197  Chromo-like domain superfamily
 IPR023780  Chromo domain
 IPR027417  P-loop containing nucleoside triphosphate hydrolase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0005524 ATP binding IEA
 molecular_functionGO:0016817 hydrolase activity, acting on acid anhydrides IEA


Pathways (from Reactome)
Pathway description
Regulation of lipid metabolism by Peroxisome proliferator-activated receptor alpha (PPARalpha)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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