ENSG00000139190


Homo sapiens

Features
Gene ID: ENSG00000139190
  
Biological name :VAMP1
  
Synonyms : P23763 / VAMP1 / vesicle associated membrane protein 1
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 12
Strand: -1
Band: p13.31
Gene start: 6462237
Gene end: 6470987
  
Corresponding Affymetrix probe sets: 207100_s_at (Human Genome U133 Plus 2.0 Array)   207101_at (Human Genome U133 Plus 2.0 Array)   213326_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000355122
Ensembl peptide - ENSP00000379602
Ensembl peptide - ENSP00000383702
Ensembl peptide - ENSP00000444181
NCBI entrez gene - 6843     See in Manteia.
OMIM - 185880
RefSeq - NM_014231
RefSeq - NM_001297438
RefSeq - NM_016830
RefSeq - NM_199245
RefSeq Peptide - NP_001284367
RefSeq Peptide - NP_055046
RefSeq Peptide - NP_058439
RefSeq Peptide - NP_954740
swissprot - P23763
swissprot - F5GZV7
Ensembl - ENSG00000139190
  
Related genetic diseases (OMIM): 108600 - Spastic ataxia 1, autosomal dominant, 108600
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 vamp1ENSDARG00000031283Danio rerio
 zgc:92912ENSDARG00000097576Danio rerio
 VAMP1ENSGALG00000022955Gallus gallus
 Vamp1ENSMUSG00000030337Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
VAMP2 / P63027 / vesicle associated membrane protein 2ENSG0000022020577
AC129492.3ENSG0000026362075
VAMP3 / Q15836 / vesicle associated membrane protein 3ENSG0000004924559
VAMP4 / O75379 / vesicle associated membrane protein 4ENSG0000011753330
VAMP8 / Q9BV40 / vesicle associated membrane protein 8ENSG0000011864028


Protein motifs (from Interpro)
Interpro ID Name
 IPR001388  Synaptobrevin
 IPR016444  Synaptobrevin/Vesicle-associated membrane protein


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006887 exocytosis IBA
 biological_processGO:0006906 vesicle fusion IBA
 biological_processGO:0016192 vesicle-mediated transport IEA
 biological_processGO:0035493 SNARE complex assembly IEA
 cellular_componentGO:0005739 mitochondrion IEA
 cellular_componentGO:0005741 mitochondrial outer membrane IEA
 cellular_componentGO:0005829 cytosol TAS
 cellular_componentGO:0005887 integral component of plasma membrane TAS
 cellular_componentGO:0009986 cell surface IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0030054 cell junction IEA
 cellular_componentGO:0030659 cytoplasmic vesicle membrane IEA
 cellular_componentGO:0030672 synaptic vesicle membrane TAS
 cellular_componentGO:0031201 SNARE complex IBA
 cellular_componentGO:0031410 cytoplasmic vesicle IEA
 cellular_componentGO:0035579 specific granule membrane IDA
 cellular_componentGO:0043005 neuron projection IEA
 cellular_componentGO:0043195 terminal bouton IEA
 cellular_componentGO:0045202 synapse IEA
 cellular_componentGO:0070821 tertiary granule membrane IDA
 molecular_functionGO:0005484 SNAP receptor activity IBA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0019905 syntaxin binding IBA


Pathways (from Reactome)
Pathway description
Toxicity of botulinum toxin type D (BoNT/D)
Toxicity of botulinum toxin type F (BoNT/F)
Toxicity of botulinum toxin type G (BoNT/G)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000492 Abnormality of the eyelid 
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 HP:0000508 Ptosis "Drooping of the eyelid." [HPO:curators]
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 HP:0000514 Slow saccades 
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 HP:0000605 Supranuclear gaze palsy 
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 HP:0001258 Spastic paraplegia 
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 HP:0001260 Dysarthria "Dysarthric speech is a general description referring to a neurological speech disorder characterized by poor articulation. Depending on the involved neurological structures, dysarthria may be further classified as spastic, flaccid, ataxic, hyperkinetic and hypokinetic, or mixed." [HPO:curators]
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 HP:0001288 Gait disturbance "The term gait disturbance can refer to any disruption of the ability to walk. In general, this can refer to neurological diseases but also fractures or other sources of pain that is triggered upon walking. However, in the current context gait disturbance refers to difficulty walking on the basis of a neurological or muscular disease." [HPO:curators]
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 HP:0001332 Dystonia "An abnormally increased muscular tone that causes fixed abnormal postures. There is a slow, intermittent twisting motion that leads to exaggerated turning and posture of the extremities and trunk." [HPO:curators]
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 HP:0001337 Tremor "An unintentional, oscillating to-and-fro muscle movement." [HPO:curators]
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 HP:0001347 Hyperreflexia "The presence of overactive or overresponsive reflexes." [HPO:curators]
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 HP:0001761 Pes cavus 
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 HP:0002015 Dysphagia "Difficulty in swallowing." [HPO:curators]
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 HP:0002064 Spastic gait 
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 HP:0002070 Limb ataxia 
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 HP:0002166 Decreased vibratory sense in the lower limbs "A decrease in the ability to perceive vibration in the legs." [HPO:curators]
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 HP:0002354 Memory impairment 
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 HP:0002355 Difficulty walking 
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 HP:0002464 Spastic dysarthria 
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 HP:0002497 Spastic ataxia 
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 HP:0003487 Babinski sign "Upturning of the big toe (and sometimes fanning of the other toes) in response to stimulation of the sole of the foot. If the Babinski sign is present it can indicate damage to the corticospinal tract." [HPO:curators]
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 HP:0003828 Variable expressivity 
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 HP:0006961 Jerky head movements 
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 HP:0008969 Leg muscle stiffness 
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 HP:0010831 Impaired proprioception "A loss or impairment of the sensation of the relative position of parts of the body and joint position." [HPO:probinson]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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