ENSG00000140694


Homo sapiens

Features
Gene ID: ENSG00000140694
  
Biological name :PARN
  
Synonyms : O95453 / PARN / poly(A)-specific ribonuclease
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 16
Strand: -1
Band: p13.12
Gene start: 14435701
Gene end: 14632728
  
Corresponding Affymetrix probe sets: 203905_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000458103
Ensembl peptide - ENSP00000456279
Ensembl peptide - ENSP00000456982
Ensembl peptide - ENSP00000345456
Ensembl peptide - ENSP00000387911
Ensembl peptide - ENSP00000410525
Ensembl peptide - ENSP00000444381
Ensembl peptide - ENSP00000445659
NCBI entrez gene - 5073     See in Manteia.
OMIM - 604212
RefSeq - XM_017023260
RefSeq - NM_001242992
RefSeq - NM_002582
RefSeq - XM_011522510
RefSeq - XM_011522511
RefSeq - XM_011522513
RefSeq - XM_011522514
RefSeq - XM_017023258
RefSeq - XM_017023259
RefSeq - NM_001134477
RefSeq Peptide - NP_002573
RefSeq Peptide - NP_001127949
RefSeq Peptide - NP_001229921
swissprot - H3BRK1
swissprot - F5H1Z4
swissprot - O95453
swissprot - H3BT23
swissprot - H3BVG1
Ensembl - ENSG00000140694
  
Related genetic diseases (OMIM): 616353 - Dyskeratosis congenita, autosomal recessive 6, 616353
  616371 - Pulmonary fibrosis and/or bone marrow failure, telomere-related, 4, 616371
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 parnENSDARG00000102634Danio rerio
 PARNENSGALG00000003091Gallus gallus
 ParnENSMUSG00000022685Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
PNLDC1 / Q8NA58 / PARN like, ribonuclease domain containing 1ENSG0000014645321


Protein motifs (from Interpro)
Interpro ID Name
 IPR001374  R3H domain
 IPR006941  Ribonuclease CAF1
 IPR012337  Ribonuclease H-like superfamily
 IPR014789  Poly(A)-specific ribonuclease, RNA-binding
 IPR034042  PARN, R3H domain
 IPR035979  RNA-binding domain superfamily
 IPR036397  Ribonuclease H superfamily
 IPR036867  R3H domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEA
 biological_processGO:0000289 nuclear-transcribed mRNA poly(A) tail shortening TAS
 biological_processGO:0006402 mRNA catabolic process IEA
 biological_processGO:0007292 female gamete generation TAS
 biological_processGO:0009451 RNA modification TAS
 biological_processGO:0032212 positive regulation of telomere maintenance via telomerase IMP
 biological_processGO:0043488 regulation of mRNA stability TAS
 biological_processGO:0051973 positive regulation of telomerase activity IMP
 biological_processGO:0090503 RNA phosphodiester bond hydrolysis, exonucleolytic IMP
 biological_processGO:0090669 telomerase RNA stabilization IMP
 biological_processGO:0110008 ncRNA deadenylation IMP
 biological_processGO:1904872 regulation of telomerase RNA localization to Cajal body IMP
 cellular_componentGO:0005634 nucleus TAS
 cellular_componentGO:0005730 nucleolus IEA
 cellular_componentGO:0005737 cytoplasm TAS
 cellular_componentGO:0005829 cytosol TAS
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding HDA
 molecular_functionGO:0003730 mRNA 3"-UTR binding TAS
 molecular_functionGO:0004518 nuclease activity TAS
 molecular_functionGO:0004527 exonuclease activity IEA
 molecular_functionGO:0004535 poly(A)-specific ribonuclease activity TAS
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0016787 hydrolase activity IEA
 molecular_functionGO:0019901 protein kinase binding IPI
 molecular_functionGO:0043169 cation binding IMP
 molecular_functionGO:0046872 metal ion binding IEA
 molecular_functionGO:0070034 telomerase RNA binding IC


Pathways (from Reactome)
Pathway description
ATF4 activates genes
Deadenylation of mRNA
KSRP (KHSRP) binds and destabilizes mRNA


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000008 Abnormality of female internal genitalia 
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 HP:0000035 Abnormality of the testis 
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 HP:0000252 Microcephaly "Microcephaly is a neurodevelopmental disorder in which the circumference of the head is more than two standard deviations smaller than the age- and gender-dependent norm." [HPO:curators]
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 HP:0000327 Hypoplasia of the maxilla "Underdevelopment of the `Maxilla` (FMA:9711)." [HPO:probinson]
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 HP:0000365 Hearing loss 
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 HP:0000498 Blepharitis "Inflammation of the eyelids." [HPO:curators]
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 HP:0000499 Abnormality of the eyelashes "An abnormality of the `eyelashes` (FMA:53669)." [HPO:probinson]
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 HP:0000518 Cataract "A cataract is an opacity or clouding that develops in the crystalline `lens` (FMA:58241) of the eye or in its `capsule` (FMA:58881)." [HPO:probinson]
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 HP:0000534 Abnormality of the eyebrow "An abnormality of the `eyebrow` (FMA:54237)." [HPO:probinson]
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 HP:0000600 Abnormality of the pharynx 
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 HP:0000668 Hypodontia "Hypodontia describes a situation when there are fewer than the normal number of teeth, whereby 6 teeth or fewer teeth are missing (oligodontia refers to the condition of missing more than 6 teeth and the congenital absence of all teeth is called anodontia)." [HPO:curators]
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 HP:0000670 Carious teeth 
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 HP:0000679 Taurodontia 
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 HP:0000704 Periodontal disease 
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 HP:0000819 Diabetes mellitus 
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 HP:0000939 Osteoporosis "Osteoporosis is a systemic skeletal disease characterized by low bone density and microarchitectural deterioration of bone tissue with a consequent increase in bone fragility. According to the WHO, osteoporosis is characterized by a value of BMD 2.5 standard deviations or more below the young adult mean." [HPO:curators]
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 HP:0000975 Hyperhidrosis "An abnormally increased perspiration." [HPO:probinson]
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 HP:0000982 Palmoplantar keratoderma 
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 HP:0001000 Abnormality of skin pigmentation 
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 HP:0001034 Hyperpigmented macules 
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 HP:0001053 Hypopigmented skin patches 
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 HP:0001231 Abnormality of the fingernails "An abnormality of the `fingernails` (FMA:54327)." [HPO:probinson]
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 HP:0001249 Mental retardation 
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 HP:0001251 Ataxia "Ataxia is a nonspecific neurological sign and symptom consisting of gross lack of coordination of muscle movements. Ataxia is caused by dysfunction of one or more parts of the nervous system including the cerebellum, the sensory nervous system, the vestibular system, or the cerebral cortex." [HPO:curators]
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001265 Hyporeflexia 
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 HP:0001276 Hypertonia 
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 HP:0001321 Cerebellar hypoplasia 
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 HP:0001394 Cirrhosis 
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 HP:0001399 Hepatic failure 
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 HP:0001508 Failure to thrive 
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 HP:0001511 Intrauterine growth retardation 
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 HP:0001596 Alopecia "Loss of hair from the head or body." [HPO:curators]
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 HP:0001744 Splenomegaly "An abnormal enlargement of the spleen." [HPO:curators]
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 HP:0001873 Thrombocytopenia 
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 HP:0001874 Abnormality of neutrophil 
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 HP:0001881 Abnormality of leukocytes 
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 HP:0001903 Anemia 
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 HP:0001928 Abnormality of coagulation 
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 HP:0002020 Gastroesophageal reflux 
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 HP:0002024 Malabsorption 
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 HP:0002110 Bronchiectasis 
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 HP:0002119 Ventriculomegaly 
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 HP:0002120 Cerebral cortical atrophy 
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 HP:0002205 Recurrent respiratory infections 
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 HP:0002206 Pulmonary fibrosis 
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 HP:0002209 Sparse scalp hair "Sparseness of the `head hair` (FMA:54241)." [HPO:probinson]
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 HP:0002216 Premature graying of hair 
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 HP:0002240 Hepatomegaly "An abnormal enlargment of the liver." [HPO:curators]
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 HP:0002514 Cerebral calcification "The presence of calcification within brain structures." [HPO:curators]
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 HP:0002575 Tracheoesophageal fistula "An abnormal connection (fistula) between the esophagus and the trachea." [HPO:curators]
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 HP:0002650 Scoliosis "The presence of an abnormal lateral curvature of the spine." [HPO:curators]
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 HP:0002664 Neoplasia "An organ or organ-system abnormality that consists of uncontrolled autonomous cell-proliferation which can occur in any part of the body as a benign or malignant tumour or neoplasm." [HPO:curators]
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 HP:0002665 Lymphoma "A cancer originating in lymphocytes and presenting as a solid tumor of lymhpoid cells." [HPO:curators]
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 HP:0002721 Immunodeficiency 
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 HP:0002745 Oral leukoplakia 
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 HP:0002757 Recurrent fractures "The repeated occurence of bone fractures (implying an abnormally increased tendency for fracture)." [HPO:curators]
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 HP:0002875 Exertional dyspnea 
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 HP:0002894 Pancreatic cancer 
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 HP:0003581 Onset in adulthood 
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 HP:0003593 Early onset 
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 HP:0003828 Variable expressivity 
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 HP:0003829 Incomplete penetrance 
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 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
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 HP:0004334 Dermal atrophy "Partial or complete wasting (atrophy) of the skin." [HPO:curators]
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 HP:0005374 Cellular immunodeficiency 
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 HP:0005528 Bone marrow hypoplasia 
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 HP:0007392 Excessive wrinkled skin 
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 HP:0007440 Generalized hyperpigmentation 
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 HP:0008065 Aplasia/Hypoplasia of the skin 
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 HP:0008066 Abnormal blistering of the skin 
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 HP:0008070 Sparse hair 
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 HP:0008404 Nail dystrophy, variable 
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 HP:0008661 Urethral stenosis 
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 HP:0010444 Pulmonary insufficiency "The retrograde (backwards) flow of blood through the pulmonary valve into the right ventricle during diastole." [HPO:curators]
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 HP:0010450 Esophageal stenosis "An abnormal narrowing of the lumen of the esophagus." [HPO:curators]
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 HP:0010624 Aplastic/hypoplastic toenails 
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 HP:0010885 Aseptic necrosis "A disease where there is cellular death (necrosis) of bone components due to interruption of the blood supply." [HPO:sdoelken]
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 HP:0011358 Generalized hypopigmentation of hair "Reduced pigmentation of hair diffusely." [DDD:cmoss]
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 HP:0011364 White hair "Hypopigmented hair that appears white." [DDD:cmoss]
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 HP:0012732 Anorectal anomaly "An abnormality of the anus or rectum." [HPO:probinson]
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 HP:0012735 Cough "A sudden, audible expulsion of air from the lungs through a partially closed glottis, preceded by inhalation." [HPO:probinson]
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 HP:0025175 Honeycomb lung "Extensive interstitial fibrosis with alveolar disruption and bronchiolectasis." []
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 HP:0025179 Ground-glass opacification "A descriptive term that is applied to computer tomography imaging and that refers to a hazy area of increased attenuation in the lung with preserved bronchial and vascular markings." []
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 HP:0025390 Reticular pattern on pulmonary HRCT "On pulmonary high-resolution computed tomography, reticular pattern is characterised by innumerable interlacing shadows suggesting a mesh." [PMID:23247773]
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 HP:0030830 Rales "Abnormal breath sounds characterized by discontinuous clicking or rattling." [UToronto:chum]
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 HP:0100585 Teleangiectasia of the skin 
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 HP:0100627 Displacement of the external urethral meatus "A displacement of the external urethral orifice from its normal position (in males normally placed at the tip of glans penis, in females normally placed about 2.5 cm behind the glans clitoridis and immediately in front of that of the vagina)." [HPO:sdoelken]
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 HP:0100670 Rough bone trabeculation 
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 HP:0100759 Clubbing of fingers "Terminal broadening of the fingers (distal phalanges of the fingers)." [HPO:sdoelken]
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 HP:0200037 skin vesicle "A circumscribed, fluid-containing, epidermal elevation generally considered less than 10mm in diameter at the widest point." [HPO:SKOEHLER]
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 HP:0200042 skin ulcer "A discontinuity of the skin exhibiting complete loss of the epidermis and often portions of the dermis and even subcutaneous fat." [HPO:SKOEHLER]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000140694 PARN / O95453 / poly(A)-specific ribonuclease  / complex
 ENSG00000172795 DCP2 / Q8IU60 / decapping mRNA 2  / complex / reaction
 ENSG00000088247 KHSRP / Q92945 / KH-type splicing regulatory protein  / reaction / complex






 

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