ENSG00000146555


Homo sapiens

Features
Gene ID: ENSG00000146555
  
Biological name :SDK1
  
Synonyms : Q7Z5N4 / SDK1 / sidekick cell adhesion molecule 1
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 7
Strand: 1
Band: p22.2
Gene start: 3301448
Gene end: 4269000
  
Corresponding Affymetrix probe sets: 229407_at (Human Genome U133 Plus 2.0 Array)   229912_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000478062
Ensembl peptide - ENSP00000374182
Ensembl peptide - ENSP00000385899
Ensembl peptide - ENSP00000404118
NCBI entrez gene - 221935     See in Manteia.
OMIM - 607216
RefSeq - XM_017011839
RefSeq - XM_011515188
RefSeq - XM_011515189
RefSeq - XM_011515190
RefSeq - XM_017011837
RefSeq - XM_017011838
RefSeq - NM_152744
RefSeq Peptide - NP_689957
swissprot - F8W6X9
swissprot - H7C255
swissprot - A0A087WTQ6
swissprot - Q7Z5N4
Ensembl - ENSG00000146555
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 sdk1aENSDARG00000078866Danio rerio
 sdk1bENSDARG00000062854Danio rerio
 SDK1ENSGALG00000004420Gallus gallus
 Sdk1ENSMUSG00000039683Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
SDK2 / Q58EX2 / sidekick cell adhesion molecule 2ENSG0000006918857
Q8TD84 / DSCAML1 / DS cell adhesion molecule like 1ENSG0000017710316
DSCAM / O60469 / DS cell adhesion moleculeENSG0000017158715
DCC / P43146 / DCC netrin 1 receptorENSG0000018732315
NEO1 / Q92859 / neogenin 1ENSG0000006714115
IGDCC4 / Q8TDY8 / immunoglobulin superfamily DCC subclass member 4ENSG0000010374212
PRTG / Q2VWP7 / protogeninENSG0000016645011
IGDCC3 / Q8IVU1 / immunoglobulin superfamily DCC subclass member 3ENSG000001744988


Protein motifs (from Interpro)
Interpro ID Name
 IPR003598  Immunoglobulin subtype 2
 IPR003599  Immunoglobulin subtype
 IPR003961  Fibronectin type III
 IPR007110  Immunoglobulin-like domain
 IPR013098  Immunoglobulin I-set
 IPR013783  Immunoglobulin-like fold
 IPR036116  Fibronectin type III superfamily
 IPR036179  Immunoglobulin-like domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007155 cell adhesion IEA
 biological_processGO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules ISS
 biological_processGO:0007416 synapse assembly ISS
 biological_processGO:0010842 retina layer formation ISS
 biological_processGO:0045216 cell-cell junction organization TAS
 biological_processGO:0048148 behavioral response to cocaine IEA
 biological_processGO:0060998 regulation of dendritic spine development IEA
 cellular_componentGO:0005886 plasma membrane TAS
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0030054 cell junction IEA
 cellular_componentGO:0045202 synapse ISS
 cellular_componentGO:0070062 extracellular exosome HDA
 molecular_functionGO:0005515 protein binding IEA
 molecular_functionGO:0042802 identical protein binding ISS


Pathways (from Reactome)
Pathway description
SDK interactions


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000146555 SDK1 / Q7Z5N4 / sidekick cell adhesion molecule 1  / reaction / complex






 

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