ENSMUSG00000039683


Mus musculus

Features
Gene ID: ENSMUSG00000039683
  
Biological name :Sdk1
  
Synonyms : Protein sidekick-1 / Q3UH53 / Sdk1
  
Possible biological names infered from orthology : Q7Z5N4 / sidekick cell adhesion molecule 1
  
Species: Mus musculus
  
Chr. number: 5
Strand: 1
Band: G2
Gene start: 141241490
Gene end: 142215586
  
Corresponding Affymetrix probe sets: 10527051 (MoGene1.0st)   1445326_at (Mouse Genome 430 2.0 Array)   1459711_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000074133
Ensembl peptide - ENSMUSP00000082928
NCBI entrez gene - 330222     See in Manteia.
MGI - MGI:2444413
RefSeq - XM_006504712
RefSeq - NM_177879
RefSeq Peptide - NP_808547
swissprot - Q3UH53
Ensembl - ENSMUSG00000039683
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 sdk1aENSDARG00000078866Danio rerio
 sdk1bENSDARG00000062854Danio rerio
 SDK1ENSGALG00000004420Gallus gallus
 SDK1ENSG00000146555Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Sdk2 / Q6V4S5 / Protein sidekick-2 / Q58EX2* / sidekick cell adhesion molecule 2*ENSMUSG0000004159258
Dscaml1 / DS cell adhesion molecule like 1 / Q8TD84*ENSMUSG0000003208717
Neo1 / neogenin / Q92859* / neogenin 1*ENSMUSG0000003234016
Dcc / P70211 / Netrin receptor DCC / P43146* / DCC netrin 1 receptor*ENSMUSG0000006053416
Dscam / Q9ERC8 / Down syndrome cell adhesion molecule homolog / O60469* / DS cell adhesion molecule*ENSMUSG0000005027216
Igdcc4 / Q9EQS9 / Immunoglobulin superfamily DCC subclass member 4 / Q8TDY8*ENSMUSG0000003281612
Prtg / Q2EY15 / Protogenin / Q2VWP7*ENSMUSG0000003603012
Igdcc3 / Q8BQC3 / Immunoglobulin superfamily DCC subclass member 3 / Q8IVU1*ENSMUSG000000323948


Protein motifs (from Interpro)
Interpro ID Name
 IPR003598  Immunoglobulin subtype 2
 IPR003599  Immunoglobulin subtype
 IPR003961  Fibronectin type III
 IPR007110  Immunoglobulin-like domain
 IPR013098  Immunoglobulin I-set
 IPR013783  Immunoglobulin-like fold
 IPR036116  Fibronectin type III superfamily
 IPR036179  Immunoglobulin-like domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007155 cell adhesion IEA
 biological_processGO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules ISS
 biological_processGO:0007416 synapse assembly ISS
 biological_processGO:0010842 retina layer formation ISS
 biological_processGO:0048148 behavioral response to cocaine IDA
 biological_processGO:0060998 regulation of dendritic spine development IDA
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0030054 cell junction IEA
 cellular_componentGO:0045202 synapse ISS
 molecular_functionGO:0003674 molecular_function ND
 molecular_functionGO:0005515 protein binding IEA
 molecular_functionGO:0042802 identical protein binding ISS


Pathways (from Reactome)
Pathway description
SDK interactions


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSMUSG00000039683 Sdk1 / Q3UH53 / Protein sidekick-1 / Q7Z5N4* / sidekick cell adhesion molecule 1*  / complex / reaction






 

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