ENSG00000158055


Homo sapiens

Features
Gene ID: ENSG00000158055
  
Biological name :GRHL3
  
Synonyms : grainyhead like transcription factor 3 / GRHL3 / Q8TE85
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 1
Strand: 1
Band: p36.11
Gene start: 24319322
Gene end: 24364482
  
Corresponding Affymetrix probe sets: 232116_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000354943
Ensembl peptide - ENSP00000348333
Ensembl peptide - ENSP00000431290
Ensembl peptide - ENSP00000435130
Ensembl peptide - ENSP00000236255
Ensembl peptide - ENSP00000288955
NCBI entrez gene - 57822     See in Manteia.
OMIM - 608317
RefSeq - XM_011541870
RefSeq - NM_001195010
RefSeq - NM_021180
RefSeq - NM_198173
RefSeq - NM_198174
RefSeq - XM_011541869
RefSeq Peptide - NP_937816
RefSeq Peptide - NP_067003
RefSeq Peptide - NP_001181939
RefSeq Peptide - NP_937817
swissprot - E9PLG9
swissprot - E9PLT6
swissprot - Q8TE85
Ensembl - ENSG00000158055
  
Related genetic diseases (OMIM): 606713 - Van der Woude syndrome 2, 606713

This gene has been taged as a transcription factor by TFT
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 grhl3ENSDARG00000078552Danio rerio
 GRHL3ENSGALG00000004249Gallus gallus
 Grhl3ENSMUSG00000037188Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
GRHL1 / Q9NZI5 / grainyhead like transcription factor 1ENSG0000013431743
GRHL2 / Q6ISB3 / grainyhead like transcription factor 2ENSG0000008330743
Q9NZI6 / TFCP2L1 / transcription factor CP2 like 1ENSG0000011511218
UBP1 / Q9NZI7 / upstream binding protein 1ENSG0000015356017
TFCP2 / Q12800 / transcription factor CP2ENSG0000013545717


Protein motifs (from Interpro)
Interpro ID Name
 IPR007604  CP2 transcription factor


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001736 establishment of planar polarity IEA
 biological_processGO:0001843 neural tube closure ISS
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006366 transcription by RNA polymerase II IEA
 biological_processGO:0007389 pattern specification process IEA
 biological_processGO:0007398 ectoderm development IEA
 biological_processGO:0007417 central nervous system development IEA
 biological_processGO:0008544 epidermis development ISS
 biological_processGO:0010628 positive regulation of gene expression IEA
 biological_processGO:0032956 regulation of actin cytoskeleton organization IGI
 biological_processGO:0042060 wound healing IEA
 biological_processGO:0043547 positive regulation of GTPase activity IEA
 biological_processGO:0045893 positive regulation of transcription, DNA-templated IEA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IDA
 biological_processGO:0061029 eyelid development in camera-type eye IEA
 biological_processGO:0061436 establishment of skin barrier IEA
 biological_processGO:0090103 cochlea morphogenesis IEA
 biological_processGO:0090179 planar cell polarity pathway involved in neural tube closure IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IDA
 molecular_functionGO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding NAS
 molecular_functionGO:0001228 transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific DNA binding IDA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0031490 chromatin DNA binding IDA
 molecular_functionGO:0043565 sequence-specific DNA binding IBA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000175 Cleft palate "Cleft palate is a developmental defect of the `palate` (FMA:54549) resulting from a failure of fusion of the palatine processes." [HPO:curators]
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 HP:0000193 Bifid uvula "A split or cleft uvula." [HPO:curators]
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 HP:0000196 Lower lip pit "Depression located on the vermilion of the lower lip, usually paramedian." [pmid:19125428]
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 HP:0000204 Cleft lip "A gap in the `upper lip` (FMA:59817). This is a congenital defect resulting from nonfusion of tissues of the lip during embryonal development." [HPO:probinson]
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 HP:0000668 Hypodontia "Hypodontia describes a situation when there are fewer than the normal number of teeth, whereby 6 teeth or fewer teeth are missing (oligodontia refers to the condition of missing more than 6 teeth and the congenital absence of all teeth is called anodontia)." [HPO:curators]
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 HP:0000674 Anodontia "The congenital absence of all teeth." [HPO:curators]
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 HP:0008376 Nasal, dysarthic speech 
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 HP:0010286 Abnormality of the salivary glands "Any abnormality of the salivary glands, the exocrine glands that produce saliva." [HPO:curators]
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 HP:0011819 Submucous cleft soft palate "A cleft of the muscular (soft) portion of the palate that is covered by mucous membrane. Soft-palate submucous clefts are characterized by a midline deficiency or lack of muscle tissue." [HPO:probinson]
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 HP:0410030 Cleft lip "A gap in the lip or lips." []
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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