ENSG00000163347


Homo sapiens

Features
Gene ID: ENSG00000163347
  
Biological name :CLDN1
  
Synonyms : claudin 1 / CLDN1 / O95832
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 3
Strand: -1
Band: q28
Gene start: 190305701
Gene end: 190322475
  
Corresponding Affymetrix probe sets: 218182_s_at (Human Genome U133 Plus 2.0 Array)   222549_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000295522
NCBI entrez gene - 9076     See in Manteia.
OMIM - 603718
RefSeq - NM_021101
RefSeq Peptide - NP_066924
swissprot - A5JSJ9
swissprot - O95832
Ensembl - ENSG00000163347
  
Related genetic diseases (OMIM): 607626 - Ichthyosis, leukocyte vacuoles, alopecia, and sclerosing cholangitis, 607626
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 cldn1ENSDARG00000040045Danio rerio
 CLDN1ENSGALG00000026862Gallus gallus
 Cldn1ENSMUSG00000022512Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
CLDN7 / O95471 / claudin 7ENSG0000018188561
CLDN19 / Q8N6F1 / claudin 19ENSG0000016400756
CLDN3 / O15551 / claudin 3ENSG0000016521551
CLDN9 / O95484 / claudin 9ENSG0000021393748
CLDN4 / O14493 / claudin 4ENSG0000018914346
CLDN14 / O95500 / claudin 14ENSG0000015926146
CLDN5 / O00501 / claudin 5ENSG0000018411345
CLDN6 / P56747 / claudin 6ENSG0000018469744
CLDN2 / P57739 / claudin 2ENSG0000016537638
CLDN8 / P56748 / claudin 8ENSG0000015628437


Protein motifs (from Interpro)
Interpro ID Name
 IPR003548  Claudin-1
 IPR004031  PMP-22/EMP/MP20/Claudin superfamily
 IPR006187  Claudin
 IPR017974  Claudin, conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007568 aging IEA
 biological_processGO:0008065 establishment of blood-nerve barrier IEA
 biological_processGO:0009636 response to toxic substance IEA
 biological_processGO:0016032 viral process IEA
 biological_processGO:0016338 calcium-independent cell-cell adhesion via plasma membrane cell-adhesion molecules ISS
 biological_processGO:0032496 response to lipopolysaccharide IEA
 biological_processGO:0042538 hyperosmotic salinity response IEA
 biological_processGO:0045216 cell-cell junction organization IMP
 biological_processGO:0045471 response to ethanol IEA
 biological_processGO:0046718 viral entry into host cell IEA
 biological_processGO:0051260 protein homooligomerization IMP
 biological_processGO:0051291 protein heterooligomerization IGI
 biological_processGO:0061436 establishment of skin barrier IMP
 biological_processGO:0061772 drug transport across blood-nerve barrier IEA
 biological_processGO:0070673 response to interleukin-18 IEA
 biological_processGO:0070830 bicellular tight junction assembly IMP
 biological_processGO:0071284 cellular response to lead ion IEA
 biological_processGO:0071346 cellular response to interferon-gamma IEA
 biological_processGO:0071356 cellular response to tumor necrosis factor IEA
 biological_processGO:0071548 response to dexamethasone IEA
 biological_processGO:0071560 cellular response to transforming growth factor beta stimulus IEA
 biological_processGO:0090557 establishment of endothelial intestinal barrier IEA
 biological_processGO:0097421 liver regeneration IEA
 biological_processGO:1903348 positive regulation of bicellular tight junction assembly IEA
 biological_processGO:1903545 cellular response to butyrate IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0005887 integral component of plasma membrane IEA
 cellular_componentGO:0005923 bicellular tight junction TAS
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane TAS
 cellular_componentGO:0016323 basolateral plasma membrane IEA
 cellular_componentGO:0016324 apical plasma membrane IEA
 cellular_componentGO:0016328 lateral plasma membrane IEA
 cellular_componentGO:0030054 cell junction IEA
 molecular_functionGO:0001618 virus receptor activity IMP
 molecular_functionGO:0005198 structural molecule activity IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0042802 identical protein binding ISS


Pathways (from Reactome)
Pathway description
Tight junction interactions


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000535 Sparse eyebrows 
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 HP:0000653 Sparse eyelashes "Decreased density/number of eyelashes." [pmid:19125427]
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 HP:0000668 Hypodontia "Hypodontia describes a situation when there are fewer than the normal number of teeth, whereby 6 teeth or fewer teeth are missing (oligodontia refers to the condition of missing more than 6 teeth and the congenital absence of all teeth is called anodontia)." [HPO:curators]
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 HP:0000677 Oligodontia "The condition of missing over 6 teeth (Missing up to 6 teeth is referred to a hypodontia)." [HPO:curators]
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 HP:0000682 Abnormality of dental enamel "An abnormality of the dental enamel, which is the external layer of the teeth, being a highly mineralized substance consisting primarily of hydroxylapatite." [HPO:curators]
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 HP:0000952 Jaundice "Yellow pigmentation of the skin or sclera due to bilirubin, which in turn is the result of increased bilirubin concentration in the bloodstream." [HPO:curators]
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 HP:0000956 Acanthosis nigricans 
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 HP:0000958 Dry skin 
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 HP:0001006 Hypotrichosis "Reduced or lacking hair growth." [HPO:curators]
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 HP:0001036 Parakeratosis 
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 HP:0001409 Portal hypertension 
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 HP:0001596 Alopecia "Loss of hair from the head or body." [HPO:curators]
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 HP:0001744 Splenomegaly "An abnormal enlargement of the spleen." [HPO:curators]
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 HP:0001871 Hematological abnormality 
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 HP:0002231 Sparse body hair "Sparseness of the body hair." [HPO:probinson]
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 HP:0002240 Hepatomegaly "An abnormal enlargment of the liver." [HPO:curators]
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 HP:0004552 scarring alopecia of scalp 
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 HP:0004782 Hypotrichosis of the scalp "Reduced or lacking hair growth of the scalp." [HPO:curators]
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 HP:0006297 Hypoplastic dental enamel 
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 HP:0008064 Ichthyosiform abnormality of the skin 
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 HP:0025092 Epidermal acanthosis "Diffuse hypertrophy or thickening of the stratum spinosum of the epidermis (prickle cell layer of the skin)." []
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 HP:0030151 Cholangitis "Inflammation of the biliary ductal system, affecting the intrahepatic or extrahepatic portions, or both." [HPO:probinson]
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 HP:0040162 Orthokeratosis "Formation of an anuclear keratin layer" []
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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