ENSG00000177084


Homo sapiens

Features
Gene ID: ENSG00000177084
  
Biological name :POLE
  
Synonyms : DNA polymerase epsilon, catalytic subunit / POLE / Q07864
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 12
Strand: -1
Band: q24.33
Gene start: 132623753
Gene end: 132687365
  
Corresponding Affymetrix probe sets: 216026_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000480727
Ensembl peptide - ENSP00000442578
Ensembl peptide - ENSP00000445753
Ensembl peptide - ENSP00000479927
Ensembl peptide - ENSP00000322570
NCBI entrez gene - 5426     See in Manteia.
OMIM - 174762
RefSeq - XM_011534800
RefSeq - NM_006231
RefSeq - XM_011534795
RefSeq - XM_011534797
RefSeq - XM_011534798
RefSeq - XM_011534799
RefSeq Peptide - NP_006222
swissprot - Q07864
swissprot - A0A087WX51
swissprot - F5H1D6
swissprot - F5H7E4
swissprot - A0A087WW42
Ensembl - ENSG00000177084
  
Related genetic diseases (OMIM): 615083 - {Colorectal cancer, susceptibility to, 12}, 615083
  615139 - FILS syndrome, 615139
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 poleENSDARG00000058533Danio rerio
 ENSGALG00000039384Gallus gallus
 ENSGALG00000007665Gallus gallus
 PoleENSMUSG00000007080Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR006133  DNA-directed DNA polymerase, family B, exonuclease domain
 IPR006134  DNA-directed DNA polymerase, family B, multifunctional domain
 IPR006172  DNA-directed DNA polymerase, family B
 IPR012337  Ribonuclease H-like superfamily
 IPR013697  DNA polymerase epsilon, catalytic subunit A, C-terminal
 IPR023211  DNA polymerase, palm domain superfamily
 IPR029703  DNA polymerase epsilon catalytic subunit
 IPR036397  Ribonuclease H superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000082 G1/S transition of mitotic cell cycle IMP
 biological_processGO:0000731 DNA synthesis involved in DNA repair IMP
 biological_processGO:0006260 DNA replication IEA
 biological_processGO:0006270 DNA replication initiation TAS
 biological_processGO:0006272 leading strand elongation IBA
 biological_processGO:0006281 DNA repair IEA
 biological_processGO:0006287 base-excision repair, gap-filling IDA
 biological_processGO:0006297 nucleotide-excision repair, DNA gap filling IMP
 biological_processGO:0006974 cellular response to DNA damage stimulus IEA
 biological_processGO:0032201 telomere maintenance via semi-conservative replication TAS
 biological_processGO:0045004 DNA replication proofreading IBA
 biological_processGO:0048568 embryonic organ development IEA
 biological_processGO:0071897 DNA biosynthetic process IEA
 biological_processGO:0090305 nucleic acid phosphodiester bond hydrolysis IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IDA
 cellular_componentGO:0005886 plasma membrane IDA
 cellular_componentGO:0008622 epsilon DNA polymerase complex IEA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003682 chromatin binding IDA
 molecular_functionGO:0003887 DNA-directed DNA polymerase activity IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0008310 single-stranded DNA 3"-5" exodeoxyribonuclease activity IBA
 molecular_functionGO:0008408 3"-5" exonuclease activity IEA
 molecular_functionGO:0016740 transferase activity IEA
 molecular_functionGO:0016779 nucleotidyltransferase activity IEA
 molecular_functionGO:0046872 metal ion binding IEA
 molecular_functionGO:0051536 iron-sulfur cluster binding IEA
 molecular_functionGO:0051539 4 iron, 4 sulfur cluster binding IEA


Pathways (from Reactome)
Pathway description
Recognition of DNA damage by PCNA-containing replication complex
Telomere C-strand synthesis initiation
PCNA-Dependent Long Patch Base Excision Repair
Termination of translesion DNA synthesis
HDR through Homologous Recombination (HRR)
Gap-filling DNA repair synthesis and ligation in GG-NER
Dual Incision in GG-NER
Dual incision in TC-NER
Gap-filling DNA repair synthesis and ligation in TC-NER
DNA replication initiation
Activation of the pre-replicative complex


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000272 Malar hypoplasia "Underdeveloped midface region." [HPO:curators]
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 HP:0000337 Broad forehead "Abnormally large side-to-side distance of the forehead." [HPO:curators]
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 HP:0001999 Facial dysmorphism 
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 HP:0002205 Recurrent respiratory infections 
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 HP:0002653 Bone pain 
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 HP:0002721 Immunodeficiency 
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 HP:0003577 Onset at birth 
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 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
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 HP:0004482 Relative macrocephaly "A relatively mild degree of macrocephaly in which the head circumference is not above two standard deviations from the mean, but appears dysproportionately large when other factors such as body stature are taken into account." [HPO:curators]
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 HP:0007421 Telangiectases of the cheeks "Telangiectases (small dilated blood vessels) located near the surface of the skin of the cheeks." [HPO:curators]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000115350 POLE4 / Q9NR33 / DNA polymerase epsilon 4, accessory subunit  / complex
 ENSG00000146143 PRIM2 / P49643 / DNA primase subunit 2  / reaction / complex
 ENSG00000014138 POLA2 / Q14181 / DNA polymerase alpha 2, accessory subunit  / reaction / complex
 ENSG00000100479 POLE2 / P56282 / DNA polymerase epsilon 2, accessory subunit  / complex
 ENSG00000198056 PRIM1 / P49642 / DNA primase subunit 1  / reaction / complex
 ENSG00000148229 POLE3 / Q9NRF9 / DNA polymerase epsilon 3, accessory subunit  / complex
 ENSG00000101868 POLA1 / P09884 / DNA polymerase alpha 1, catalytic subunit  / complex / reaction






 

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