ENSG00000197375


Homo sapiens

Features
Gene ID: ENSG00000197375
  
Biological name :SLC22A5
  
Synonyms : O76082 / SLC22A5 / solute carrier family 22 member 5
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 5
Strand: 1
Band: q31.1
Gene start: 132369752
Gene end: 132395614
  
Corresponding Affymetrix probe sets: 205074_at (Human Genome U133 Plus 2.0 Array)   239615_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000402760
Ensembl peptide - ENSP00000400553
Ensembl peptide - ENSP00000401860
Ensembl peptide - ENSP00000245407
Ensembl peptide - ENSP00000388838
Ensembl peptide - ENSP00000389284
NCBI entrez gene - 6584     See in Manteia.
OMIM - 603377
RefSeq - XM_017009778
RefSeq - NM_001308122
RefSeq - NM_003060
RefSeq - XM_011543590
RefSeq Peptide - NP_003051
RefSeq Peptide - NP_001295051
swissprot - H7C1R8
swissprot - O76082
swissprot - H7BZC0
swissprot - H7BZF0
swissprot - F8WCC9
Ensembl - ENSG00000197375
  
Related genetic diseases (OMIM): 212140 - Carnitine deficiency, systemic primary, 212140
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 slc22a21ENSDARG00000094112Danio rerio
 slc22a4ENSDARG00000005335Danio rerio
 slc22a5ENSDARG00000101021Danio rerio
 SLC22A5ENSGALG00000036920Gallus gallus
 Q9WTN6ENSMUSG00000063652Mus musculus
 Q9Z0E8ENSMUSG00000018900Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q9H015 / SLC22A4 / solute carrier family 22 member 4ENSG0000019720873
O15245 / SLC22A1 / solute carrier family 22 member 1ENSG0000017500332
O15244 / SLC22A2 / solute carrier family 22 member 2ENSG0000011249931
Q9Y226 / SLC22A13 / solute carrier family 22 member 13ENSG0000017294030
Q86VW1 / SLC22A16 / solute carrier family 22 member 16ENSG0000000480929
Q8TCC7 / SLC22A8 / solute carrier family 22 member 8ENSG0000014945229
O75751 / SLC22A3 / solute carrier family 22 member 3ENSG0000014647729
Q9Y694 / SLC22A7 / solute carrier family 22 member 7ENSG0000013720429
Q9NSA0 / SLC22A11 / solute carrier family 22 member 11ENSG0000016806528
Q8IZD6 / SLC22A15 / solute carrier family 22 member 15ENSG0000016339328
Q96S37 / SLC22A12 / solute carrier family 22 member 12ENSG0000019789128
Q8N4F4 / SLC22A24 / solute carrier family 22 member 24ENSG0000019765827
Q4U2R8 / SLC22A6 / solute carrier family 22 member 6ENSG0000019790127
Q63ZE4 / SLC22A10 / solute carrier family 22 member 10ENSG0000018499926
Q8IVM8 / SLC22A9 / solute carrier family 22 member 9ENSG0000014974225
Q6T423 / SLC22A25 / solute carrier family 22 member 25ENSG0000019660025
Q9Y267 / SLC22A14 / solute carrier family 22 member 14ENSG0000014467122


Protein motifs (from Interpro)
Interpro ID Name
 IPR004749  Organic cation transport protein/SVOP
 IPR005828  Major facilitator, sugar transporter-like
 IPR005829  Sugar transporter, conserved site
 IPR020846  Major facilitator superfamily domain
 IPR036259  MFS transporter superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006811 ion transport IEA
 biological_processGO:0006814 sodium ion transport IEA
 biological_processGO:0006855 drug transmembrane transport IEA
 biological_processGO:0009437 carnitine metabolic process IBA
 biological_processGO:0015697 quaternary ammonium group transport IDA
 biological_processGO:0015711 organic anion transport IEA
 biological_processGO:0015879 carnitine transport IMP
 biological_processGO:0015893 drug transport IC
 biological_processGO:0052106 quorum sensing involved in interaction with host IMP
 biological_processGO:0055085 transmembrane transport IEA
 biological_processGO:0060731 positive regulation of intestinal epithelial structure maintenance IMP
 biological_processGO:0070715 sodium-dependent organic cation transport IDA
 biological_processGO:1902603 carnitine transmembrane transport TAS
 cellular_componentGO:0005886 plasma membrane IC
 cellular_componentGO:0005887 integral component of plasma membrane IBA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0016324 apical plasma membrane IDA
 cellular_componentGO:0031526 brush border membrane ISS
 cellular_componentGO:0070062 extracellular exosome HDA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0005215 transporter activity IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0005524 ATP binding IEA
 molecular_functionGO:0008514 organic anion transmembrane transporter activity IBA
 molecular_functionGO:0015226 carnitine transmembrane transporter activity IMP
 molecular_functionGO:0015238 drug transmembrane transporter activity IC
 molecular_functionGO:0015293 symporter activity IEA
 molecular_functionGO:0015491 cation:cation antiporter activity IBA
 molecular_functionGO:0015651 quaternary ammonium group transmembrane transporter activity IDA
 molecular_functionGO:0022857 transmembrane transporter activity IEA
 molecular_functionGO:0030165 PDZ domain binding IPI


Pathways (from Reactome)
Pathway description
Import of palmitoyl-CoA into the mitochondrial matrix
Organic cation transport
Defective SLC22A5 causes systemic primary carnitine deficiency (CDSP)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000467 Neck muscle weakness 
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 HP:0001252 Muscular hypotonia "Muscular hypotonia is an abnormally low muscle tone (the amount of tension or resistance to movement in a muscle), often involving reduced muscle strength. Hypotonia is characterized by a diminished resistance to passive stretching." [HPO:curators]
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 HP:0001254 Lethargy 
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 HP:0001259 Coma 
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 HP:0001262 Somnolence 
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 HP:0001289 Confusion "Lack of clarity and coherence of thought, perception, understanding, or action." [HPO:curators]
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 HP:0001290 Generalized hypotonia "Generalized muscular hypotonia (abnormally low muscle tone)." [HPO:curators]
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 HP:0001298 Encephalopathy 
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 HP:0001324 Muscle weakness "Reduced strength of muscles." [HPO:curators]
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 HP:0001397 Hepatic steatosis 
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 HP:0001508 Failure to thrive 
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 HP:0001635 Congestive heart failure "The presence of an abnormality of cardiac function that is responsible for the failure of the heart to pump blood at a rate that is commensurate with the needs of the tissues or a state in which abnormally elevated filling pressures are required for the heart to do so. Heart failure is frequently related to a defect in myocardial contraction." [HPO:curators]
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 HP:0001639 Hypertrophic cardiomyopathy 
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 HP:0001640 Cardiomegaly 
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 HP:0001706 Endocardial fibroelastosis 
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 HP:0001943 Hypoglycemia "A lower than normal level of blood glucose." [HPO:curators]
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 HP:0001987 Hyperammonemia 
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 HP:0001988 Recurrent hypoglycemic episodes 
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 HP:0002013 Vomiting 
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 HP:0002240 Hepatomegaly "An abnormal enlargment of the liver." [HPO:curators]
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 HP:0002312 Clumsiness 
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 HP:0002910 Elevated transaminases "Elevations of the levels of SGOT and SGPT in the serum. SGOT (serum glutamic oxaloacetic transaminase) and SGPT (serum glutamic pyruvic transaminase) are transaminases primarily found in the liver and heart and are released into the bloodstream as the result of liver or heart damage. SGOT and SGPT are used clinically mainly as markers of liver damage." [HPO:curators]
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 HP:0003198 Myopathy 
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 HP:0003234 Decreased plasma carnitine 
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 HP:0005959 Impaired gluconeogenesis 
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 HP:0006846 Acute encephalopathy 
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 HP:0007334 Partial seizures with secondary generalization "`Partial seizures` (HP:0007359) with secondary evolution into a `generalized seizures` (HP:0002197)." [HPO:probinson]
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 HP:0030362 Reduced muscle carnitine level "A reduction in the level of carnitine in muscle tissue." [HPO:probinson, pmid:8174281, pmid:8472351]
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 HP:0045061 Decreased carnitine level in liver 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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