ENSG00000239672


Homo sapiens

Features
Gene ID: ENSG00000239672
  
Biological name :NME1
  
Synonyms : NME1 / NME/NM23 nucleoside diphosphate kinase 1 / P15531
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 17
Strand: 1
Band: q21.33
Gene start: 51153536
Gene end: 51162428
  
Corresponding Affymetrix probe sets: 201577_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000376892
Ensembl peptide - ENSP00000387682
Ensembl peptide - ENSP00000435498
Ensembl peptide - ENSP00000429318
Ensembl peptide - ENSP00000428553
Ensembl peptide - ENSP00000013034
Ensembl peptide - ENSP00000337060
NCBI entrez gene - 4830     See in Manteia.
OMIM - 156490
RefSeq - NM_198175
RefSeq - NM_000269
RefSeq Peptide - NP_000260
RefSeq Peptide - NP_937818
swissprot - P15531
swissprot - E5RHP0
swissprot - C9K028
swissprot - E7ERL0
Ensembl - ENSG00000239672
  
Related genetic diseases (OMIM): 256700 - Neuroblastoma, 256700
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 nme2aENSDARG00000043820Danio rerio
 nme2b.1ENSDARG00000103791Danio rerio
 nme2b.2ENSDARG00000099420Danio rerio
 NME2ENSGALG00000002932Gallus gallus
 Nme1ENSMUSG00000037601Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
NME1-NME2 / NME1-NME2 readthroughENSG0000001105276
NME2 / P22392 / NME/NM23 nucleoside diphosphate kinase 2ENSG0000024367875
NME3 / Q13232 / NME/NM23 nucleoside diphosphate kinase 3ENSG0000010302458
NME4 / O00746 / NME/NM23 nucleoside diphosphate kinase 4ENSG0000010320249
NME5 / P56597 / NME/NM23 family member 5ENSG0000011298125
NME8 / Q8N427 / NME/NM23 family member 8ENSG0000008628824
NME6 / O75414 / NME/NM23 nucleoside diphosphate kinase 6ENSG0000017211323
NME7 / Q9Y5B8 / NME/NM23 family member 7ENSG0000014315623
NME9 / Q86XW9 / NME/NM23 family member 9ENSG0000018132214


Protein motifs (from Interpro)
Interpro ID Name
 IPR001564  Nucleoside diphosphate kinase
 IPR023005  Nucleoside diphosphate kinase, active site
 IPR034907  Nucleoside diphosphate kinase-like domain
 IPR036850  Nucleoside diphosphate kinase-like domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0002762 negative regulation of myeloid leukocyte differentiation IEA
 biological_processGO:0006165 nucleoside diphosphate phosphorylation IEA
 biological_processGO:0006183 GTP biosynthetic process IEA
 biological_processGO:0006228 UTP biosynthetic process IEA
 biological_processGO:0006241 CTP biosynthetic process IEA
 biological_processGO:0006259 DNA metabolic process IEA
 biological_processGO:0006897 endocytosis IEA
 biological_processGO:0007399 nervous system development IEA
 biological_processGO:0007595 lactation IEA
 biological_processGO:0008285 negative regulation of cell proliferation TAS
 biological_processGO:0009117 nucleotide metabolic process IEA
 biological_processGO:0010629 negative regulation of gene expression IEA
 biological_processGO:0010976 positive regulation of neuron projection development IEA
 biological_processGO:0014075 response to amine IEA
 biological_processGO:0015949 nucleobase-containing small molecule interconversion TAS
 biological_processGO:0016310 phosphorylation IEA
 biological_processGO:0021766 hippocampus development IEA
 biological_processGO:0030154 cell differentiation IEA
 biological_processGO:0030879 mammary gland development IEA
 biological_processGO:0033574 response to testosterone IEA
 biological_processGO:0035690 cellular response to drug IEA
 biological_processGO:0042493 response to drug IEA
 biological_processGO:0042981 regulation of apoptotic process TAS
 biological_processGO:0043388 positive regulation of DNA binding IDA
 biological_processGO:0050679 positive regulation of epithelial cell proliferation IMP
 biological_processGO:0051591 response to cAMP IEA
 biological_processGO:0071333 cellular response to glucose stimulus IEA
 biological_processGO:0071398 cellular response to fatty acid IEA
 cellular_componentGO:0005634 nucleus TAS
 cellular_componentGO:0005737 cytoplasm TAS
 cellular_componentGO:0005739 mitochondrion IEA
 cellular_componentGO:0005741 mitochondrial outer membrane IEA
 cellular_componentGO:0005813 centrosome IEA
 cellular_componentGO:0005829 cytosol IDA
 cellular_componentGO:0005882 intermediate filament IEA
 cellular_componentGO:0016020 membrane HDA
 cellular_componentGO:0032587 ruffle membrane IDA
 cellular_componentGO:0043209 myelin sheath IEA
 cellular_componentGO:0048471 perinuclear region of cytoplasm IEA
 cellular_componentGO:0070062 extracellular exosome HDA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0000287 magnesium ion binding IDA
 molecular_functionGO:0000977 RNA polymerase II regulatory region sequence-specific DNA binding IEA
 molecular_functionGO:0003697 single-stranded DNA binding IEA
 molecular_functionGO:0003723 RNA binding HDA
 molecular_functionGO:0004536 deoxyribonuclease activity IDA
 molecular_functionGO:0004550 nucleoside diphosphate kinase activity EXP
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0005524 ATP binding IEA
 molecular_functionGO:0005525 GTP binding IDA
 molecular_functionGO:0016301 kinase activity IEA
 molecular_functionGO:0016740 transferase activity IEA
 molecular_functionGO:0019215 intermediate filament binding IEA
 molecular_functionGO:0019899 enzyme binding IEA
 molecular_functionGO:0042802 identical protein binding IPI
 molecular_functionGO:0043015 gamma-tubulin binding IEA
 molecular_functionGO:0043024 ribosomal small subunit binding IPI
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
Interconversion of nucleotide di- and triphosphates


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000765 Abnormality of the thorax "Any abnormality of the thorax (the region of the body formed by the sternum, the thoracic vertebrae and the ribs)." [HPO:curators]
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 HP:0000822 Hypertension "High blood pressure." [HPO:curators]
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 HP:0001251 Ataxia "Ataxia is a nonspecific neurological sign and symptom consisting of gross lack of coordination of muscle movements. Ataxia is caused by dysfunction of one or more parts of the nervous system including the cerebellum, the sensory nervous system, the vestibular system, or the cerebral cortex." [HPO:curators]
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 HP:0001336 Myoclonus "Very brief, involuntary random muscular contractions occurring at rest, in response to sensory stimuli, or accompanying voluntary movements." [HPO:curators]
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 HP:0001425 Heterogeneous 
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 HP:0001508 Failure to thrive 
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 HP:0001824 Weight loss 
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 HP:0001903 Anemia 
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 HP:0001945 Fever 
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 HP:0002014 Diarrhea 
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 HP:0002027 Abdominal pain 
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 HP:0002176 Spinal cord compression 
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 HP:0002277 Horner syndrome 
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 HP:0002653 Bone pain 
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 HP:0003005 Ganglioneuroma 
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 HP:0003006 Neuroblastoma "Neuroblastoma is a solid tumor that originate in neural crest cells of the sympathetic nervous system. Most neuroblastomas originate in the abdomen, and most abdominal neuroblastomas originate in the adrenal gland. Neuroblastomas can also originate in the thorax, usually in the posterior mediastinum." [HPO:curators]
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 HP:0003745 Sporadic 
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 HP:0003829 Incomplete penetrance 
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 HP:0006747 Ganglioneuroblastoma 
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 HP:0010543 Opsoclonus "Spontaneous, non-rhythmic, multi-directional, chaotic movements of the eyes, giving the appearance of agitation. There may be bursts of conjugate movement of the eyes in varying directions and of varying amplitude." [HPO:curators]
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 HP:0011977 Elevated urinary homovanillic acid "An `increased concentration` (PATO:0001162) of `homovanillic acid` (CHEBI:545959) in the `urine` (FMA:12274)." [HPO:probinson]
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 HP:0011978 Elevated urinary vanillylmandelic acid "An `increased concentration` (PATO:0001162) of `vanillylmandelic acid` (CHEBI:20106) in the `urine` (FMA:12274)." [HPO:probinson]
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 HP:0011979 Elevated urinary dopamine "An increased concentration of `dopamine` (CHEBI:18243) in the `urine` (FMA:12274)." [HPO:probinson]
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 HP:0200036 skin nodules "Morphologically similar to a papule, but greater than either 10mm in both width and depth, and most frequently centered in the dermis or subcutaneous fat." [HPO:SKOEHLER]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000239672 NME1 / P15531 / NME/NM23 nucleoside diphosphate kinase 1  / complex
 ENSG00000103024 NME3 / Q13232 / NME/NM23 nucleoside diphosphate kinase 3  / complex
 ENSG00000243678 NME2 / P22392 / NME/NM23 nucleoside diphosphate kinase 2  / complex






 

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