ENSG00000258947


Homo sapiens

Features
Gene ID: ENSG00000258947
  
Biological name :TUBB3
  
Synonyms : Q13509 / TUBB3 / tubulin beta 3 class III
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 16
Strand: 1
Band: q24.3
Gene start: 89921392
Gene end: 89938761
  
Corresponding Affymetrix probe sets: 202154_x_at (Human Genome U133 Plus 2.0 Array)   213476_x_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000452554
Ensembl peptide - ENSP00000485859
Ensembl peptide - ENSP00000320295
Ensembl peptide - ENSP00000450538
Ensembl peptide - ENSP00000450765
Ensembl peptide - ENSP00000450822
Ensembl peptide - ENSP00000451276
Ensembl peptide - ENSP00000451378
Ensembl peptide - ENSP00000451465
Ensembl peptide - ENSP00000451617
Ensembl peptide - ENSP00000451985
Ensembl peptide - ENSP00000452001
Ensembl peptide - ENSP00000452166
NCBI entrez gene - 10381     See in Manteia.
OMIM - 602661
RefSeq - NM_001197181
RefSeq - NM_006086
RefSeq Peptide - NP_001184110
RefSeq Peptide - NP_006077
swissprot - G3V3R4
swissprot - G3V3W7
swissprot - G3V4U2
swissprot - G3V542
swissprot - G3V5W4
swissprot - Q13509
swissprot - G3V2A3
swissprot - G3V2N6
swissprot - G3V2R8
swissprot - G3V3J6
Ensembl - ENSG00000258947
  
Related genetic diseases (OMIM): 600638 - Fibrosis of extraocular muscles, congenital, 3A, 600638
  614039 - Cortical dysplasia, complex, with other brain malformations 1, 614039
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ENSGALG00000000059Gallus gallus
 Tubb3ENSMUSG00000062380Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
AC092143.1ENSG0000019821197
P68371 / TUBB4B / tubulin beta 4B class IVbENSG0000018822992
TUBB6 / Q9BUF5 / tubulin beta 6 class VENSG0000017601492
TUBB / P07437 / tubulin beta class IENSG0000019623091
P04350 / TUBB4A / tubulin beta 4A class IVaENSG0000010483391
Q9BVA1 / TUBB2B / tubulin beta 2B class IIbENSG0000013728591
Q13885 / TUBB2A / tubulin beta 2A class IIaENSG0000013726791
TUBB8 / Q3ZCM7 / tubulin beta 8 class VIIIENSG0000026145685
A6NNZ2 / TUBB8P12 / tubulin beta 8 pseudogene 12ENSG0000017321384
TUBB1 / Q9H4B7 / tubulin beta 1 class VIENSG0000010116278
TUBE1 / Q9UJT0 / tubulin epsilon 1ENSG0000007493533
TUBD1 / Q9UJT1 / tubulin delta 1ENSG0000010842322
MC1R / Q01726 / melanocortin 1 receptorENSG000002588392


Protein motifs (from Interpro)
Interpro ID Name
 IPR000217  Tubulin
 IPR002453  Beta tubulin
 IPR003008  Tubulin/FtsZ, GTPase domain
 IPR008280  Tubulin/FtsZ, C-terminal
 IPR013838  Beta tubulin, autoregulation binding site
 IPR017975  Tubulin, conserved site
 IPR018316  Tubulin/FtsZ, 2-layer sandwich domain
 IPR036525  Tubulin/FtsZ, GTPase domain superfamily
 IPR037103  Tubulin/FtsZ, C-terminal domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000278 mitotic cell cycle IEA
 biological_processGO:0007010 cytoskeleton organization IEA
 biological_processGO:0007017 microtubule-based process IEA
 biological_processGO:0007411 axon guidance IEA
 biological_processGO:0030182 neuron differentiation IEA
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005634 nucleus HDA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005856 cytoskeleton IEA
 cellular_componentGO:0005874 microtubule IEA
 cellular_componentGO:0015630 microtubule cytoskeleton IEA
 cellular_componentGO:0030424 axon IEA
 cellular_componentGO:0030425 dendrite IEA
 cellular_componentGO:0043025 neuronal cell body IEA
 cellular_componentGO:0070062 extracellular exosome HDA
 cellular_componentGO:0071944 cell periphery IEA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0003924 GTPase activity IEA
 molecular_functionGO:0005200 structural constituent of cytoskeleton IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0005525 GTP binding IEA
 molecular_functionGO:0042277 peptide binding IEA


Pathways (from Reactome)
Pathway description
Translocation of SLC2A4 (GLUT4) to the plasma membrane
Microtubule-dependent trafficking of connexons from Golgi to the plasma membrane
Gap junction assembly
MHC class II antigen presentation
Separation of Sister Chromatids
Resolution of Sister Chromatid Cohesion
HSP90 chaperone cycle for steroid hormone receptors (SHR)
Recruitment of NuMA to mitotic centrosomes
Prefoldin mediated transfer of substrate to CCT/TriC
Formation of tubulin folding intermediates by CCT/TriC
Post-chaperonin tubulin folding pathway
Recycling pathway of L1
Hedgehog off state
Cilium Assembly
Intraflagellar transport
RHO GTPases activate IQGAPs
RHO GTPases Activate Formins
COPI-mediated anterograde transport
COPI-dependent Golgi-to-ER retrograde traffic
COPI-independent Golgi-to-ER retrograde traffic
Mitotic Prometaphase
The role of GTSE1 in G2/M progression after G2 checkpoint
Carboxyterminal post-translational modifications of tubulin
Kinesins


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000252 Microcephaly "Microcephaly is a neurodevelopmental disorder in which the circumference of the head is more than two standard deviations smaller than the age- and gender-dependent norm." [HPO:curators]
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 HP:0000486 Strabismus "Strabismus (also known as squint) is a condition in which the eyes are not properly aligned with each other." [HPO:curators]
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 HP:0000508 Ptosis "Drooping of the eyelid." [HPO:curators]
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 HP:0000577 Exotropia 
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 HP:0000639 Nystagmus "Rhythmic, involuntary oscillations of one or both eyes related to abnormality in fixation, conjugate gaze, or vestibular mechanisms." [HPO:curators]
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 HP:0000646 Amblyopia "Reduced visual acuity that is uncorrectable by lenses in the absence of detectable anatomic defects in the eye or visual pathways. Ambylopia can result from visual deprivation during the critical period of development of visual abilities which lasts to about the age of 8 years. Thus, ambylopia can result from strabismus, anisometropia, or high hypermetropia in there is a failure to form a focused image in one or both eyes." [HPO:curators]
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 HP:0001239 Wrist contractures 
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001257 Spasticity "A motor disorder characterized by a velocity-dependent increase in tonic stretch reflexes with increased muscle tone, exaggerated (hyperexcitable) tendon reflexes." [HPO:curators]
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001274 Agenesis of corpus callosum "Absence of the corpus callosum as a result of the failure of the corpus callosum to develop, which can be the result of a failure in any one of the multiple steps of callosal development including cellular proliferation and migration, axonal growth or glial patterning at the midline." [HPO:curators]
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 HP:0001328 Learning disability 
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 HP:0001339 Lissencephaly "A congenital absence of the convolutions of the cerebral cortex and a poorly formed sylvian fissure." [HPO:curators]
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 HP:0001477 Compensatory chin elevation 
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 HP:0001491 Congenital fibrosis of extraocular muscles 
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 HP:0002079 Hypoplasia of the corpus callosum "Underdevelopment of the corpus callosum." [HPO:curators]
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 HP:0002126 Polymicrogyria "A congenital abnormality of the cerebral hemisphere characterized by an excessive number of small gyri (convolutions) on the surface of the brain." [HPO:curators]
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 HP:0002342 Mental retardation, moderate "Moderate mental retardation is defined as an intelligence quotient (IQ) in the range of 35-49." [HPO:curators]
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 HP:0002365 Hypoplasia of the brainstem 
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 HP:0002539 Cortical dysplasia 
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 HP:0003477 Axonal neuropathy 
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 HP:0003577 Onset at birth 
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 HP:0003812 Phenotypic variability 
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 HP:0003828 Variable expressivity 
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 HP:0007831 Nonprogressive restrictive ophthalmoplegia 
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 HP:0008936 Muscular hypotonia of the trunk "Muscular hypotonia (abnormally low muscle tone) affecting the musculature of the trunk." [HPO:curators]
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 HP:0009473 Joint contractures involving the joints of the hand 
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 HP:0010628 Facial muscle weakness "A weakness of any or all of the muscles of the face of any etiology." [HPO:curators]
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 HP:0012241 Levator palpebrae superioris atrophy "Atrophy of the `levator palpebrae superioris` (FMA:49041), the extraocular muscle that elevates the superior eyelid." [HPO:probinson]
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 HP:0012242 Superior rectus atrophy "Atrophy of the `superior rectus` (FMA:49035), the extraocular muscle whose primary function is to elevate the globe." [HPO:probinson]
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 HP:0100490 Camptodactyly (hands) "Contractures of one ore more joints of the fingers." [HPO:sdoelken]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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