ENSGALG00000032097


Gallus gallus

Features
Gene ID: ENSGALG00000032097
  
Biological name :TBX20
  
Synonyms : Q8UW76 / T-box transcription factor TBX20 / TBX20
  
Possible biological names infered from orthology : Q9ES03 / Q9UMR3 / T-box 20
  
Species: Gallus gallus
  
Chr. number: 2
Strand: 1
Band:
Gene start: 47403388
Gene end: 47435575
  
Corresponding Affymetrix probe sets: Gga.4201.1.S1_at (Chicken Array)   Gga.4201.1.S2_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000052363
NCBI entrez gene - 373943     See in Manteia.
RefSeq - NM_204144
RefSeq Peptide - NP_989475
swissprot - Q8UW76
Ensembl - ENSGALG00000032097
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 tbx20ENSDARG00000005150Danio rerio
 TBX20ENSG00000164532Homo sapiens
 Tbx20ENSMUSG00000031965Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
TBX18 / T-box transcription factor TBX18 / O95935* / T-box 18*ENSGALG0000003278938
TBX22 / T-box 22 / Q8K402* / Q9Y458*ENSGALG0000000409337
TBX3 / T-box 3 / O15119* / P70324*ENSGALG0000003604335
TBX2 / T-box 2 / Q13207* / Q60707* / T-box transcription factor TBX2 *ENSGALG0000003429734
TBX1 / T-box 1 / O43435*ENSGALG0000004118233
TBX5 / Q9PWE8 / T-box transcription factor TBX5 / Q99593* / P70326* / T-box 5*ENSGALG0000000825332
TBX4 / T-box 4 / P57082* / P70325*ENSGALG0000000528530
TBX10* / O75333* / Q810F8* / T-box 10* / T-box transcription factor TBX10 *ENSGALG0000003876729
TBX6 / T-box-containing protein TBX6L / O95947* / P70327* / T-box 6* / T-box transcription factor TBX6 *ENSGALG0000000637428
TBX15 / T-box 15 / O70306* / Q96SF7* / T-box transcription factor TBX15 *ENSGALG0000001477626


Protein motifs (from Interpro)
Interpro ID Name
 IPR001699  Transcription factor, T-box
 IPR008967  p53-like transcription factor, DNA-binding
 IPR018186  Transcription factor, T-box, conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000122 negative regulation of transcription by RNA polymerase II IEA
 biological_processGO:0001569 branching involved in blood vessel morphogenesis IEA
 biological_processGO:0001764 neuron migration IEA
 biological_processGO:0001947 heart looping IEA
 biological_processGO:0003143 embryonic heart tube morphogenesis IEA
 biological_processGO:0003148 outflow tract septum morphogenesis IEA
 biological_processGO:0003151 outflow tract morphogenesis IEA
 biological_processGO:0003175 tricuspid valve development IEA
 biological_processGO:0003176 aortic valve development IEA
 biological_processGO:0003180 aortic valve morphogenesis IEA
 biological_processGO:0003193 pulmonary valve formation IEA
 biological_processGO:0003203 endocardial cushion morphogenesis IEA
 biological_processGO:0003207 cardiac chamber formation IEA
 biological_processGO:0003215 cardiac right ventricle morphogenesis IEA
 biological_processGO:0003272 endocardial cushion formation IEA
 biological_processGO:0003279 cardiac septum development IEA
 biological_processGO:0003344 pericardium morphogenesis IEA
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006366 transcription by RNA polymerase II IEA
 biological_processGO:0006936 muscle contraction IEA
 biological_processGO:0007275 multicellular organism development IEA
 biological_processGO:0008015 blood circulation IEA
 biological_processGO:0008283 cell proliferation IEA
 biological_processGO:0009953 dorsal/ventral pattern formation IEA
 biological_processGO:0010628 positive regulation of gene expression IDA
 biological_processGO:0010629 negative regulation of gene expression IDA
 biological_processGO:0010991 negative regulation of SMAD protein complex assembly IEA
 biological_processGO:0021524 visceral motor neuron differentiation IEA
 biological_processGO:0030335 positive regulation of cell migration IMP
 biological_processGO:0035050 embryonic heart tube development IEA
 biological_processGO:0035922 foramen ovale closure IEA
 biological_processGO:0036306 embryonic heart tube elongation IEA
 biological_processGO:0045892 negative regulation of transcription, DNA-templated IEA
 biological_processGO:0045893 positive regulation of transcription, DNA-templated IEA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IEA
 biological_processGO:0055008 cardiac muscle tissue morphogenesis IEA
 biological_processGO:0060045 positive regulation of cardiac muscle cell proliferation IEA
 biological_processGO:0060413 atrial septum morphogenesis IEA
 biological_processGO:0060577 pulmonary vein morphogenesis IEA
 biological_processGO:0060973 cell migration involved in heart development IMP
 biological_processGO:2000793 cell proliferation involved in heart valve development IDA
 cellular_componentGO:0005634 nucleus IDA
 cellular_componentGO:0005737 cytoplasm IEA
 molecular_functionGO:0000977 RNA polymerase II regulatory region sequence-specific DNA binding IEA
 molecular_functionGO:0000978 RNA polymerase II proximal promoter sequence-specific DNA binding IEA
 molecular_functionGO:0001077 transcriptional activator activity, RNA polymerase II proximal promoter sequence-specific DNA binding IEA
 molecular_functionGO:0001085 RNA polymerase II transcription factor binding IEA
 molecular_functionGO:0001102 RNA polymerase II activating transcription factor binding IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr