ENSGALG00000034317


Gallus gallus

Features
Gene ID: ENSGALG00000034317
  
Biological name :SYNJ1
  
Synonyms : synaptojanin 1 / SYNJ1
  
Possible biological names infered from orthology : O43426
  
Species: Gallus gallus
  
Chr. number: 1
Strand: -1
Band:
Gene start: 105010118
Gene end: 105068573
  
Corresponding Affymetrix probe sets: GgaAffx.10134.1.S1_at (Chicken Array)   GgaAffx.10134.2.S1_at (Chicken Array)   GgaAffx.10134.3.S1_at (Chicken Array)   GgaAffx.10134.5.S1_s_at (Chicken Array)   GgaAffx.10134.6.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000043522
NCBI entrez gene - 418498     See in Manteia.
RefSeq - XM_015299811
RefSeq - XM_015299812
RefSeq - XM_015299818
RefSeq - XM_015299825
RefSeq - XM_015299833
RefSeq - XM_015299838
RefSeq - XM_015299841
RefSeq - XM_015299848
RefSeq - XM_015299851
RefSeq - XM_015299854
RefSeq - XM_015299861
RefSeq - XM_015299867
RefSeq - XM_015299803
swissprot - A0A1D5NT69
Ensembl - ENSGALG00000034317
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 synj1ENSDARG00000025011Danio rerio
 SYNJ1ENSG00000159082Homo sapiens
 Synj1ENSMUSG00000022973Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
SYNJ2 / synaptojanin 2 / O15056* / Q9D2G5*ENSGALG0000001372742
OCRL / OCRL, inositol polyphosphate-5-phosphatase / Q01968* / Q6NVF0* / Inositol polyphosphate 5-phosphatase OCRL-1 *ENSGALG0000000392013
INPP5B / inositol polyphosphate-5-phosphatase B / P32019* / Q8K337* / Type II inositol 1,4,5-trisphosphate 5-phosphatase *ENSGALG0000000160612
INPP5D / inositol polyphosphate-5-phosphatase D / Q92835* / Q9ES52* / Phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 1 *ENSGALG0000003549811
INPPL1 / inositol polyphosphate phosphatase like 1 / O15357* / Q6P549* / Phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 2 *ENSGALG0000000433610
INPP5J / inositol polyphosphate-5-phosphatase J / P59644* / Q15735* / Phosphatidylinositol 4,5-bisphosphate 5-phosphatase A *ENSGALG000000232669
INPP5E / inositol polyphosphate-5-phosphatase E / Q9JII1* / Q9NRR6* / 72 kDa inositol polyphosphate 5-phosphatase *ENSGALG000000019649
INPP5K / inositol polyphosphate 5-phosphatase K / Q8C5L6* / Q9BT40*ENSGALG000000027397


Protein motifs (from Interpro)
Interpro ID Name
 IPR000300  Inositol polyphosphate-related phosphatase
 IPR000504  RNA recognition motif domain
 IPR002013  SAC domain
 IPR005135  Endonuclease/exonuclease/phosphatase
 IPR012677  Nucleotide-binding alpha-beta plait domain superfamily
 IPR015047  Domain of unknown function DUF1866


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0046856 phosphatidylinositol dephosphorylation IEA
 biological_processGO:0048488 synaptic vesicle endocytosis IEA
 cellular_componentGO:0005623 cell IEA
 cellular_componentGO:0045202 synapse IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0016787 hydrolase activity IEA
 molecular_functionGO:0034595 phosphatidylinositol phosphate 5-phosphatase activity IEA
 molecular_functionGO:0042578 phosphoric ester hydrolase activity IEA


Pathways (from Reactome)
Pathway description
Synthesis of PIPs at the plasma membrane
Synthesis of IP2, IP, and Ins in the cytosol
Synthesis of IP3 and IP4 in the cytosol
Clathrin-mediated endocytosis


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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