ENSGALG00000013727


Gallus gallus

Features
Gene ID: ENSGALG00000013727
  
Biological name :SYNJ2
  
Synonyms : synaptojanin 2 / SYNJ2
  
Possible biological names infered from orthology : O15056 / Q9D2G5
  
Species: Gallus gallus
  
Chr. number: 3
Strand: 1
Band:
Gene start: 51934949
Gene end: 51998398
  
Corresponding Affymetrix probe sets: Gga.10735.1.S1_at (Chicken Array)   Gga.7424.1.S1_at (Chicken Array)   GgaAffx.24260.1.S1_s_at (Chicken Array)   GgaAffx.24260.3.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000022272
NCBI entrez gene - 421656     See in Manteia.
RefSeq - XM_003640916
RefSeq - XM_015284215
RefSeq - XM_015284216
swissprot - E1BTW4
Ensembl - ENSGALG00000013727
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SYNJ2ENSG00000078269Homo sapiens
 Synj2ENSMUSG00000023805Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
SYNJ1 / synaptojanin 1 / O43426*ENSGALG0000003431742
OCRL / OCRL, inositol polyphosphate-5-phosphatase / Q01968* / Q6NVF0* / Inositol polyphosphate 5-phosphatase OCRL-1 *ENSGALG0000000392013
INPP5D / inositol polyphosphate-5-phosphatase D / Q92835* / Q9ES52* / Phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 1 *ENSGALG0000003549812
INPP5B / inositol polyphosphate-5-phosphatase B / P32019* / Q8K337* / Type II inositol 1,4,5-trisphosphate 5-phosphatase *ENSGALG0000000160612
INPPL1 / inositol polyphosphate phosphatase like 1 / O15357* / Q6P549* / Phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 2 *ENSGALG0000000433610
INPP5E / inositol polyphosphate-5-phosphatase E / Q9JII1* / Q9NRR6* / 72 kDa inositol polyphosphate 5-phosphatase *ENSGALG0000000196410
INPP5J / inositol polyphosphate-5-phosphatase J / P59644* / Q15735* / Phosphatidylinositol 4,5-bisphosphate 5-phosphatase A *ENSGALG000000232669
INPP5K / inositol polyphosphate 5-phosphatase K / Q8C5L6* / Q9BT40*ENSGALG000000027397


Protein motifs (from Interpro)
Interpro ID Name
 IPR000300  Inositol polyphosphate-related phosphatase
 IPR000504  RNA recognition motif domain
 IPR002013  SAC domain
 IPR005135  Endonuclease/exonuclease/phosphatase
 IPR012677  Nucleotide-binding alpha-beta plait domain superfamily
 IPR015047  Domain of unknown function DUF1866


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0046856 phosphatidylinositol dephosphorylation IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0016787 hydrolase activity IEA
 molecular_functionGO:0034595 phosphatidylinositol phosphate 5-phosphatase activity IEA
 molecular_functionGO:0042578 phosphoric ester hydrolase activity IEA


Pathways (from Reactome)
Pathway description
Synthesis of PIPs at the plasma membrane
Clathrin-mediated endocytosis


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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