ENSG00000159082


Homo sapiens

Features
Gene ID: ENSG00000159082
  
Biological name :SYNJ1
  
Synonyms : O43426 / synaptojanin 1 / SYNJ1
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 21
Strand: -1
Band: q22.11
Gene start: 32628759
Gene end: 32728048
  
Corresponding Affymetrix probe sets: 207594_s_at (Human Genome U133 Plus 2.0 Array)   212990_at (Human Genome U133 Plus 2.0 Array)   232993_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000388869
Ensembl peptide - ENSP00000387868
Ensembl peptide - ENSP00000409667
Ensembl peptide - ENSP00000487560
Ensembl peptide - ENSP00000413649
Ensembl peptide - ENSP00000412707
Ensembl peptide - ENSP00000349903
Ensembl peptide - ENSP00000371931
Ensembl peptide - ENSP00000371939
NCBI entrez gene - 8867     See in Manteia.
OMIM - 604297
RefSeq - XM_017028505
RefSeq - NM_003895
RefSeq - NM_203446
RefSeq - XM_017028494
RefSeq - XM_017028495
RefSeq - XM_017028496
RefSeq - XM_017028497
RefSeq - XM_017028498
RefSeq - XM_017028499
RefSeq - XM_017028500
RefSeq - XM_017028501
RefSeq - XM_017028502
RefSeq - XM_017028503
RefSeq - XM_017028504
RefSeq - NM_001160302
RefSeq - NM_001160306
RefSeq Peptide - NP_003886
RefSeq Peptide - NP_982271
RefSeq Peptide - NP_001153774
RefSeq Peptide - NP_001153778
swissprot - H7BZC2
swissprot - J3KPK1
swissprot - C9JW66
swissprot - O43426
swissprot - A0A0D9SGJ6
swissprot - J3KQV8
swissprot - C9JFZ1
swissprot - C9J1Z6
swissprot - H7BZ56
Ensembl - ENSG00000159082
  
Related genetic diseases (OMIM): 615530 - Parkinson disease 20, early-onset, 615530
  617389 - Epileptic encephalopathy, early infantile, 53, 617389
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 synj1ENSDARG00000025011Danio rerio
 SYNJ1ENSGALG00000034317Gallus gallus
 Synj1ENSMUSG00000022973Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
SYNJ2 / O15056 / synaptojanin 2ENSG0000007826940
INPP5B / P32019 / inositol polyphosphate-5-phosphatase BENSG0000020408414
INPP5D / Q92835 / inositol polyphosphate-5-phosphatase DENSG0000016891813
INPP5J / Q15735 / inositol polyphosphate-5-phosphatase JENSG0000018513313
OCRL / Q01968 / OCRL, inositol polyphosphate-5-phosphataseENSG0000012212613
INPPL1 / O15357 / inositol polyphosphate phosphatase like 1ENSG0000016545812
INPP5E / Q9NRR6 / inositol polyphosphate-5-phosphatase EENSG0000014838410
INPP5K / Q9BT40 / inositol polyphosphate-5-phosphatase KENSG000001323767
Q96GF1 / RNF185 / ring finger protein 185ENSG000001389423


Protein motifs (from Interpro)
Interpro ID Name
 IPR000300  Inositol polyphosphate-related phosphatase
 IPR000504  RNA recognition motif domain
 IPR002013  SAC domain
 IPR005135  Endonuclease/exonuclease/phosphatase
 IPR015047  Domain of unknown function DUF1866
 IPR034971  Synaptojanin-1, RNA recognition motif
 IPR034972  Synaptojanin-1
 IPR035979  RNA-binding domain superfamily
 IPR036691  Endonuclease/exonuclease/phosphatase superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006661 phosphatidylinositol biosynthetic process TAS
 biological_processGO:0006836 neurotransmitter transport ISS
 biological_processGO:0006897 endocytosis IEA
 biological_processGO:0007420 brain development IEA
 biological_processGO:0007612 learning IMP
 biological_processGO:0014015 positive regulation of gliogenesis IEA
 biological_processGO:0016082 synaptic vesicle priming ISS
 biological_processGO:0016191 synaptic vesicle uncoating ISS
 biological_processGO:0032526 response to retinoic acid IEA
 biological_processGO:0034097 response to cytokine IEA
 biological_processGO:0036092 phosphatidylinositol-3-phosphate biosynthetic process IEA
 biological_processGO:0043647 inositol phosphate metabolic process TAS
 biological_processGO:0046488 phosphatidylinositol metabolic process ISS
 biological_processGO:0046855 inositol phosphate dephosphorylation ISS
 biological_processGO:0046856 phosphatidylinositol dephosphorylation IEA
 biological_processGO:0048260 positive regulation of receptor-mediated endocytosis IEA
 biological_processGO:0048488 synaptic vesicle endocytosis IEA
 biological_processGO:0048489 synaptic vesicle transport ISS
 biological_processGO:0061024 membrane organization TAS
 biological_processGO:1904980 positive regulation of endosome organization IMP
 cellular_componentGO:0005623 cell IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005829 cytosol TAS
 cellular_componentGO:0005874 microtubule ISS
 cellular_componentGO:0012506 vesicle membrane ISS
 cellular_componentGO:0030117 membrane coat ISS
 cellular_componentGO:0030132 clathrin coat of coated pit ISS
 cellular_componentGO:0043005 neuron projection IEA
 cellular_componentGO:0043195 terminal bouton ISS
 cellular_componentGO:0045202 synapse IEA
 cellular_componentGO:0048471 perinuclear region of cytoplasm ISS
 cellular_componentGO:0097060 synaptic membrane ISS
 cellular_componentGO:0098793 presynapse IDA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0004438 phosphatidylinositol-3-phosphatase activity IDA
 molecular_functionGO:0004439 phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity ISS
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0008022 protein C-terminus binding IEA
 molecular_functionGO:0016787 hydrolase activity IEA
 molecular_functionGO:0017124 SH3 domain binding IEA
 molecular_functionGO:0034595 phosphatidylinositol phosphate 5-phosphatase activity IEA
 molecular_functionGO:0034596 phosphatidylinositol phosphate 4-phosphatase activity TAS
 molecular_functionGO:0042578 phosphoric ester hydrolase activity IEA
 molecular_functionGO:0043812 phosphatidylinositol-4-phosphate phosphatase activity IDA
 molecular_functionGO:0043813 phosphatidylinositol-3,5-bisphosphate 5-phosphatase activity TAS
 molecular_functionGO:0052629 phosphatidylinositol-3,5-bisphosphate 3-phosphatase activity TAS
 molecular_functionGO:0052658 inositol-1,4,5-trisphosphate 5-phosphatase activity TAS
 molecular_functionGO:0052659 inositol-1,3,4,5-tetrakisphosphate 5-phosphatase activity TAS


Pathways (from Reactome)
Pathway description
Synthesis of PIPs at the plasma membrane
Synthesis of IP2, IP, and Ins in the cytosol
Synthesis of IP3 and IP4 in the cytosol
Clathrin-mediated endocytosis


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000338 Hypomimic face 
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 HP:0000605 Supranuclear gaze palsy 
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 HP:0000658 Eyelid apraxia 
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 HP:0001249 Mental retardation 
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001260 Dysarthria "Dysarthric speech is a general description referring to a neurological speech disorder characterized by poor articulation. Depending on the involved neurological structures, dysarthria may be further classified as spastic, flaccid, ataxic, hyperkinetic and hypokinetic, or mixed." [HPO:curators]
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 HP:0001265 Hyporeflexia 
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 HP:0001268 Mental deterioration 
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 HP:0001290 Generalized hypotonia "Generalized muscular hypotonia (abnormally low muscle tone)." [HPO:curators]
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 HP:0001300 Parkinsonism 
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 HP:0001332 Dystonia "An abnormally increased muscular tone that causes fixed abnormal postures. There is a slow, intermittent twisting motion that leads to exaggerated turning and posture of the extremities and trunk." [HPO:curators]
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 HP:0001336 Myoclonus "Very brief, involuntary random muscular contractions occurring at rest, in response to sensory stimuli, or accompanying voluntary movements." [HPO:curators]
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 HP:0001337 Tremor "An unintentional, oscillating to-and-fro muscle movement." [HPO:curators]
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 HP:0001621 Soft voice 
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 HP:0001761 Pes cavus 
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 HP:0002063 Rigidity 
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 HP:0002066 Gait ataxia "Impairment of the ability to coordinate the movements required for normal walking." [HPO:curators]
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 HP:0002067 Bradykinesia "Bradykinesia literally means slow movement, and is used clinically to denote a slowness in the execution of movement (in contrast to hypokinesia, which is used to refer to slowness in the initiation of movement)." [HPO:curators]
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 HP:0002079 Hypoplasia of the corpus callosum "Underdevelopment of the corpus callosum." [HPO:curators]
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 HP:0002133 Status epilepticus 
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 HP:0002151 Increased serum lactate "Abnormally increased level of blood lactate (2-hydroxypropanoic acid). Lactate is produced from pyruvate by lactate dehydrogenase during normal metabolism." [HPO:curators]
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 HP:0002172 Postural instability 
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 HP:0002187 Mental retardation, profound "Severe mental retardation is defined as an intelligence quotient (IQ) below 20." [HPO:curators]
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 HP:0002304 Akinesia 
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 HP:0002322 Resting tremor "A resting tremor occurs when muscles are at rest and becomes less noticeable or disappears when the affected muscles are moved. Resting tremors are often slow and coarse." [HPO:curators]
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 HP:0002344 Progressive neurologic deterioration 
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 HP:0002362 Shuffling gait 
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 HP:0002425 Anarthria "A defect in the motor ability that enables speech." [HPO:curators]
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 HP:0002510 Spastic tetraplegia "Spastic paralysis affecting all four limbs." [HPO:curators]
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 HP:0002540 Inability to walk 
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 HP:0002650 Scoliosis "The presence of an abnormal lateral curvature of the spine." [HPO:curators]
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 HP:0003236 Elevated serum creatine phosphokinase 
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 HP:0003676 Progressive disorder 
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 HP:0007164 Slowed slurred speech 
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 HP:0007256 Mild pyramidal signs 
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 HP:0007311 Short stepped shuffling gait 
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 HP:0008969 Leg muscle stiffness 
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 HP:0011968 Feeding difficulties "Impaired ability to eat related to problems gathering food and getting ready to suck, chew, or swallow it." [ISCA:eriggs]
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 HP:0012378 Fatigue "A subjective feeling of tiredness characterized by a lack of energy and motivation." [HPO:probinson]
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 HP:0012444 Brain atrophy "Partial or complete wasting (loss) of brain tissue that was once present." [HPO:probinson]
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 HP:0025401 Staring gaze "An abnormality in which the eyes are held permanently wide open." [PMID:22675666]
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 HP:0200134 Epileptic encephalopathy 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000079805 DNM2 / P50570 / dynamin 2  / complex / reaction






 

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