ENSG00000122126


Homo sapiens

Features
Gene ID: ENSG00000122126
  
Biological name :OCRL
  
Synonyms : OCRL / OCRL, inositol polyphosphate-5-phosphatase / Q01968
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: X
Strand: 1
Band: q26.1
Gene start: 129539849
Gene end: 129592561
  
Corresponding Affymetrix probe sets: 203446_s_at (Human Genome U133 Plus 2.0 Array)   208316_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000495615
Ensembl peptide - ENSP00000349635
Ensembl peptide - ENSP00000360154
Ensembl peptide - ENSP00000493809
Ensembl peptide - ENSP00000494940
NCBI entrez gene - 4952     See in Manteia.
OMIM - 300535
RefSeq - XM_017029554
RefSeq - NM_000276
RefSeq - NM_001318784
RefSeq - NM_001587
RefSeq - XM_005262422
RefSeq - XM_011531344
RefSeq - XM_011531345
RefSeq Peptide - NP_000267
RefSeq Peptide - NP_001305713
RefSeq Peptide - NP_001578
swissprot - Q01968
Ensembl - ENSG00000122126
  
Related genetic diseases (OMIM): 300555 - Dent disease 2, 300555
  309000 - Lowe syndrome, 309000
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ocrlENSDARG00000078106Danio rerio
 OCRLENSGALG00000003920Gallus gallus
 OcrlENSMUSG00000001173Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
INPP5B / P32019 / inositol polyphosphate-5-phosphatase BENSG0000020408445
SYNJ2 / O15056 / synaptojanin 2ENSG0000007826924
SYNJ1 / O43426 / synaptojanin 1ENSG0000015908222
INPP5J / Q15735 / inositol polyphosphate-5-phosphatase JENSG0000018513319
INPP5D / Q92835 / inositol polyphosphate-5-phosphatase DENSG0000016891817
INPPL1 / O15357 / inositol polyphosphate phosphatase like 1ENSG0000016545817
INPP5E / Q9NRR6 / inositol polyphosphate-5-phosphatase EENSG0000014838413
INPP5K / Q9BT40 / inositol polyphosphate-5-phosphatase KENSG0000013237613
Q96GF1 / RNF185 / ring finger protein 185ENSG000001389424


Protein motifs (from Interpro)
Interpro ID Name
 IPR000198  Rho GTPase-activating protein domain
 IPR000300  Inositol polyphosphate-related phosphatase
 IPR005135  Endonuclease/exonuclease/phosphatase
 IPR008936  Rho GTPase activation protein
 IPR013783  Immunoglobulin-like fold
 IPR031995  Inositol polyphosphate 5-phosphatase, clathrin binding domain
 IPR036691  Endonuclease/exonuclease/phosphatase superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001701 in utero embryonic development IEA
 biological_processGO:0006629 lipid metabolic process TAS
 biological_processGO:0006661 phosphatidylinositol biosynthetic process TAS
 biological_processGO:0007165 signal transduction IEA
 biological_processGO:0030030 cell projection organization IEA
 biological_processGO:0036092 phosphatidylinositol-3-phosphate biosynthetic process IEA
 biological_processGO:0043087 regulation of GTPase activity IDA
 biological_processGO:0043547 positive regulation of GTPase activity IEA
 biological_processGO:0043647 inositol phosphate metabolic process TAS
 biological_processGO:0046856 phosphatidylinositol dephosphorylation IEA
 biological_processGO:0051056 regulation of small GTPase mediated signal transduction TAS
 biological_processGO:0060271 cilium assembly IMP
 biological_processGO:0061024 membrane organization TAS
 cellular_componentGO:0001750 photoreceptor outer segment IEA
 cellular_componentGO:0005634 nucleus IDA
 cellular_componentGO:0005737 cytoplasm IDA
 cellular_componentGO:0005768 endosome IEA
 cellular_componentGO:0005769 early endosome IDA
 cellular_componentGO:0005794 Golgi apparatus IEA
 cellular_componentGO:0005795 Golgi stack TAS
 cellular_componentGO:0005798 Golgi-associated vesicle TAS
 cellular_componentGO:0005802 trans-Golgi network IDA
 cellular_componentGO:0005829 cytosol TAS
 cellular_componentGO:0005886 plasma membrane IDA
 cellular_componentGO:0005905 clathrin-coated pit IEA
 cellular_componentGO:0005929 cilium IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0030136 clathrin-coated vesicle IDA
 cellular_componentGO:0030670 phagocytic vesicle membrane IEA
 cellular_componentGO:0031410 cytoplasmic vesicle IEA
 cellular_componentGO:0031901 early endosome membrane IEA
 cellular_componentGO:0042995 cell projection IEA
 cellular_componentGO:0070062 extracellular exosome HDA
 molecular_functionGO:0004439 phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity TAS
 molecular_functionGO:0005096 GTPase activator activity IDA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0016787 hydrolase activity IEA
 molecular_functionGO:0034596 phosphatidylinositol phosphate 4-phosphatase activity TAS
 molecular_functionGO:0043813 phosphatidylinositol-3,5-bisphosphate 5-phosphatase activity TAS
 molecular_functionGO:0048365 Rac GTPase binding IPI
 molecular_functionGO:0052658 inositol-1,4,5-trisphosphate 5-phosphatase activity TAS
 molecular_functionGO:0052659 inositol-1,3,4,5-tetrakisphosphate 5-phosphatase activity TAS
 molecular_functionGO:0052745 inositol phosphate phosphatase activity NAS


Pathways (from Reactome)
Pathway description
Synthesis of PIPs at the plasma membrane
Synthesis of PIPs at the Golgi membrane
Synthesis of IP2, IP, and Ins in the cytosol
Synthesis of IP3 and IP4 in the cytosol
Rho GTPase cycle
Golgi Associated Vesicle Biogenesis
Clathrin-mediated endocytosis


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000023 Inguinal hernia 
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 HP:0000027 Azoospermia 
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 HP:0000028 Cryptorchidism "Absence of one or both testes from the scrotum owing to failure of the testis or testes to descend through the inguinal canal to the testis." [HPO:curators]
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 HP:0000083 Renal failure 
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 HP:0000091 Abnormality of the renal tubules 
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 HP:0000093 Proteinuria 
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 HP:0000114 Proximal renal tubule defect 
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 HP:0000121 Nephrocalcinosis 
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 HP:0000189 Narrow palate "Width of the palate more than 2 SD below the mean (objective) or apparently decreased palatal width (subjective)." [pmid:19125428]
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 HP:0000194 Open mouth 
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 HP:0000219 Thin upper lip 
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 HP:0000230 Gingivitis 
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 HP:0000232 Everted lower lip 
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 HP:0000276 Long face 
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 HP:0000293 Full cheeks 
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 HP:0000303 Mandibular prognathia "Abnormal prominence of the chin related to an abnormally long mandible." [HPO:curators]
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 HP:0000343 Long philtrum 
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 HP:0000347 Mandibular hypoplasia "Underdevelopment of the mandible." [HPO:curators]
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 HP:0000368 Low-set, posteriorly rotated ears 
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 HP:0000389 Chronic otitis media 
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 HP:0000411 Protruding ears 
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 HP:0000486 Strabismus "Strabismus (also known as squint) is a condition in which the eyes are not properly aligned with each other." [HPO:curators]
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 HP:0000490 Deep set eyes 
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 HP:0000501 Glaucoma "Glaucoma refers loss of retinal ganglion cells in a characteristic pattern of optic neuropathy usually associated with increased intraocular pressure." [HPO:curators]
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 HP:0000505 Impaired vision 
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 HP:0000518 Cataract "A cataract is an opacity or clouding that develops in the crystalline `lens` (FMA:58241) of the eye or in its `capsule` (FMA:58881)." [HPO:probinson]
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 HP:0000519 Congenital cataract "A congenital `cataract` (HP:0000518)." [HPO:probinson]
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 HP:0000557 Buphthalmos "Buphthalmos refers to a congenital open-angle glaucoma of the eye. The term buphthalmos (from Greek bous or ox and ophthalmos or eye) is descriptive of an enlarged eyeglobe resulting from increased intraocular pressure. The eyeglobe is especially prone to distension in newborns and infants because its collagen filaments are not as rigid as in adults and may easily be stretched." [HPO:curators]
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 HP:0000568 Microphthalmos "A developmental anomaly characterized by abnormal smallness of one or both eyes." [HPO:curators]
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 HP:0000582 Upslanting palpebral fissures 
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 HP:0000615 Abnormality of the pupils 
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 HP:0000632 Lacrimation abnormality 
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 HP:0000639 Nystagmus "Rhythmic, involuntary oscillations of one or both eyes related to abnormality in fixation, conjugate gaze, or vestibular mechanisms." [HPO:curators]
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 HP:0000646 Amblyopia "Reduced visual acuity that is uncorrectable by lenses in the absence of detectable anatomic defects in the eye or visual pathways. Ambylopia can result from visual deprivation during the critical period of development of visual abilities which lasts to about the age of 8 years. Thus, ambylopia can result from strabismus, anisometropia, or high hypermetropia in there is a failure to form a focused image in one or both eyes." [HPO:curators]
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 HP:0000670 Carious teeth 
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 HP:0000678 Dental overcrowding 
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 HP:0000679 Taurodontia 
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 HP:0000682 Abnormality of dental enamel "An abnormality of the dental enamel, which is the external layer of the teeth, being a highly mineralized substance consisting primarily of hydroxylapatite." [HPO:curators]
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 HP:0000684 Delayed dentition "Delayed eruption of teeth." [HPO:curators]
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 HP:0000704 Periodontal disease 
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 HP:0000716 Depression "A condition characterized by pervasive dysphoric mood, loss of interests, and inability to experience pleasure." [HPO:curators]
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 HP:0000718 Aggressive behavior "Aggressive behavior can denote verbal aggression, physical aggression against objects, physical aggression against people, and may also include aggression towards oneself." [HPO:curators]
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 HP:0000722 Obsessive-compulsive disorder 
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 HP:0000733 Stereotyped, repetitive behaviour 
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 HP:0000739 Anxiety 
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 HP:0000772 Abnormality of the ribs 
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 HP:0000787 Kidney stones 
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 HP:0000790 Hematuria "The presence of blood in the urine. Hematuria may be gross hematuria (visible to the naked eye) or microscopic hematuria (detected by dipstick or microscopic examination of the urine)." [HPO:curators]
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 HP:0000823 Delayed puberty 
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 HP:0000843 Hyperparathyroidism 
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 HP:0000859 Increased plasma aldosterone 
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 HP:0000873 Diabetes insipidus "A state of excessive water intake and hypotonic (dilute) polyuria. Diabetes insipidus may be due to failure of vasopressin (AVP) release (central or neurogenic diabetes insipidus) or to a failure of the kidney to respond to AVP (nephrogenic diabetes insipidus)." [HPO:curators]
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 HP:0000926 Platyspondyly 
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 HP:0000944 Abnormality of the metaphyses 
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 HP:0000987 Scarring 
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 HP:0001225 Wrist swelling 
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 HP:0001249 Mental retardation 
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001284 Areflexia 
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 HP:0001319 Neonatal hypotonia "Muscular hypotonia (abnormally low muscle tone) manifesting in the neonatal period." [HPO:curators]
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 HP:0001369 Arthritis 
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 HP:0001382 Joint hypermobility "The ability of a joint to move beyond its normal range of motion." [HPO:curators]
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 HP:0001386 Joint swelling 
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 HP:0001387 Joint stiffness "Joint stiffness is a perceived sensation of tightness in a joint or joints when attempting to move them after a period of inactivity. Joint stiffness typically subsides over time." [HPO:curators]
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 HP:0001419 X-linked recessive inheritance "A mode of inheritance that is observed for recessive traits related to a gene encoded on the X chromosome. In the context of medical genetics, X-linked recessive disorders manifest in males (who have one copy of the X chromosome and are thus hemizygotes), but generally not in female heterozygotes who have one mutant and one normal allele." [HPO:curators]
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 HP:0001482 Subcutaneous nodules 
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 HP:0001508 Failure to thrive 
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 HP:0001522 Death in infancy 
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 HP:0001537 Umbilical hernia "Protrusion of abdominal contents through a defect in the abdominal wall musculature around the umbilicus. Skin and subcutaneous tissue overlie the defect." [HPO:curators]
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 HP:0001608 Abnormality of the voice "Any abnormality of the voice." [HPO:curators]
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 HP:0001873 Thrombocytopenia 
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 HP:0001903 Anemia 
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 HP:0001944 Dehydration 
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 HP:0001994 Renal Fanconi syndrome 
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 HP:0002002 Deep philtrum 
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 HP:0002007 Frontal bossing "The presence of an unusually prominent forehead." [HPO:curators]
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 HP:0002019 Constipation 
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 HP:0002020 Gastroesophageal reflux 
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 HP:0002024 Malabsorption 
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 HP:0002049 Proximal renal tubular acidosis 
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 HP:0002093 Respiratory insufficiency 
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 HP:0002119 Ventriculomegaly 
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 HP:0002148 Hypophosphatemia "A lower than normal level of blood phosphate." [HPO:curators]
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 HP:0002150 Hypercalciuria 
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 HP:0002151 Increased serum lactate "Abnormally increased level of blood lactate (2-hydroxypropanoic acid). Lactate is produced from pyruvate by lactate dehydrogenase during normal metabolism." [HPO:curators]
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 HP:0002169 Clonus 
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 HP:0002205 Recurrent respiratory infections 
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 HP:0002209 Sparse scalp hair "Sparseness of the `head hair` (FMA:54241)." [HPO:probinson]
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 HP:0002213 Fine hair 
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 HP:0002353 EEG abnormalities "Abnormality observed by electroencephalogram (EEG), which is used to record of the brain s spontaneous electrical activity from multiple electrodes placed on the scalp." [HPO:curators]
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 HP:0002357 Dysphasia 
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 HP:0002650 Scoliosis "The presence of an abnormal lateral curvature of the spine." [HPO:curators]
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 HP:0002748 Rickets 
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 HP:0002749 Osteomalacia "Osteomalacia is a general term for bone weakness owing to a defect in mineralization of the protein framework known as osteoid. This defective mineralization is mainly caused by lack in vitamin D. Osteomalacia in children is known as rickets." [HPO:curators]
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 HP:0002756 Pathologic fracture "A pathologic fracture occurs when a bone breaks in an area that is weakened secondary to another disease process such as tumor, infection, and certain inherited bone disorders. A pathologic fracture can occur without a degree of trauma required to cause fracture in healthy bone." [HPO:curators]
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 HP:0002757 Recurrent fractures "The repeated occurence of bone fractures (implying an abnormally increased tendency for fracture)." [HPO:curators]
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 HP:0002808 Kyphosis 
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 HP:0002827 Dislocated hips 
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 HP:0002857 Genu valgum 
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 HP:0002900 Hypokalemia 
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 HP:0002902 Hyponatremia 
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 HP:0002999 Dislocation of patella "The kneecap normally is located within the groove termed trochlea on the distal femur and can slide up and down in it. Patellar dislocation occurs if the patella fully dislocates out of the groove." [HPO:curators]
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 HP:0003109 Hyperphosphaturia "An increased excretion of phosphates in the urine." [HPO:curators]
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 HP:0003124 Hypercholesterolemia 
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 HP:0003126 Low-molecular-weight proteinuria 
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 HP:0003148 Elevated serum acid phosphatase 
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 HP:0003236 Elevated serum creatine phosphokinase 
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 HP:0003355 Abnormal urinary amino-acid findings 
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 HP:0003646 Bicarbonaturia 
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 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
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 HP:0004639 Elevated amniotic fluid alpha-fetoprotein "An elevation of alpha-feto protein measured in the amniotic fluid." [HPO:curators]
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 HP:0005469 Occipital plagiocephaly "Occipital plagiocephaly can result from fusion or sclerosis of the lambdoid suture. If unilateral, this is accompanied by unilateral occipital flattening and bulging of the ispilateral frontal bone." [HPO:curators]
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 HP:0005562 Multiple renal cysts 
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 HP:0005692 Joint hyperflexibility 
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 HP:0005930 Abnormality of the epiphyses 
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 HP:0005984 Elevated maternal serum alpha-fetoprotein "An elevation of alpha-feto protein in the maternal serum." [HPO:curators]
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 HP:0006297 Hypoplastic dental enamel 
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 HP:0007018 Attention deficit hyperactivity disorder "Attention deficit hyperactivity disorder (ADHD) manifests at age 2-3 years or by first grade at the latest. The main symptoms are distractibility, impulsivity, hyperactivity, and often trouble organizing tasks and projects, difficulty going to sleep, and social problems from being aggressive, loud, or impatient." [HPO:curators]
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 HP:0007109 Periventricular cysts 
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 HP:0007513 Generalized hypopigmentation 
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 HP:0007663 Decreased central vision 
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 HP:0007731 Chorioretinal dysplasia 
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 HP:0007948 Dense, posterior cortical cataract 
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 HP:0007957 Variable degree of corneal opacities 
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 HP:0008069 Neoplasia of the skin 
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 HP:0008872 Feeding problems in infancy 
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 HP:0009473 Joint contractures involving the joints of the hand 
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 HP:0009804 Reduced number of teeth 
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 HP:0010471 Oligosacchariduria "Increased urinary excretion of oligosaccharides (low molecular weight carbohydrate chains composed of at least three monosaccharide subunits), derived from a partial degradation of glycoproteins." [HPO:curators]
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 HP:0010807 Open bite "Visible space between the dental arches in occlusion." [pmid:19125428]
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 HP:0011463 Childhood onset "Onset of disease at the age of between 1 and 5 years." [DDD:hfirth]
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 HP:0011527 Lentiglobus "Exaggerated curvature of the lens of the eye, producing an anterior or posterior spherical bulging." [DDD:gblack]
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 HP:0012622 Chronic kidney disease "Functional anomaly of the kidney persisting for at least three months." [Eurenomics:ewuehl]
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 HP:0025131 Finger swelling "Enlargement of the soft tissues of one or more fingers." [PMID:16269085, PMID:19946526, PMID:24758199, PMID:9715244]
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 HP:0100490 Camptodactyly (hands) "Contractures of one ore more joints of the fingers." [HPO:sdoelken]
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 HP:0100493 Hypoammonemia "A decreased concentration of `ammonia` (CHEBI:16134) in the `blood` (FMA:9670)." [HPO:gcarletti]
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 HP:0100512 Vitamin D deficiency 
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 HP:0100530 Abnormality of calcium-phosphate metabolism 
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 HP:0100543 Cognitive impairment "Abnormality in the process of thought including the ability to process information." [HPO:sdoelken]
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 HP:0100589 Urogenital fistula "The presence of a `fistula` (MPATH:70) affecting the `genitourinary system` (FMA:280610)." [HPO:probinson]
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 HP:0100612 Odontogenic neoplasm "Neoplasm involving odontogenic cells, an `odontogenic tumor` (MPATH:379)." [HPO:sdoelken]
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 HP:0100716 Autoagression "Aggression towards oneself." [HPO:sdoelken]
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 HP:0100750 Atelectasis 
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 HP:0100820 Glomerulopathy "Inflammatory or noninflammatory diseases affecting the glomeruli of the nephron." [HPO:sdoelken]
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 HP:0100825 Cheilitis "Inflammation of the lip." [HPO:sdoelken]
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 HP:0100835 Benign neoplasm of the central nervous system 
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 HP:0200042 skin ulcer "A discontinuity of the skin exhibiting complete loss of the epidermis and often portions of the dermis and even subcutaneous fat." [HPO:SKOEHLER]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000079805 DNM2 / P50570 / dynamin 2  / complex / reaction






 

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